Cinclus cinclus (white-throated dipper): 134056639
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Entry
134056639 CDS
T10813
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccic03036
]
134056639 (SHOC1)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Meiosis-specific proteins
Others
134056639 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
134056639
NCBI-ProteinID:
XP_062369476
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All DBs
Position
Z:32765046..32808737
Genome browser
AA seq
1462 aa
AA seq
DB search
MLKMTQNKIFPALNYHSTDYLYESMARQKFSIWKLSLCFPPCLHQDEKYHLNGLFADEKY
RKPWTRIGSIQNMIAISVLDQWKKNLPVEDFLEKKPISSVEFQTSNYLLEVIPSSNPCSQ
TDTEEPFLLMKNGFKEDSTQDKYLKICYATEFKEPGQDLCLEEEFVFIDNLENFRKKLPT
LSILLSRLQFFLVKDPILDSEGQILTGENIFRECLTFQNGMKMEKSQNELLGIKENFCTI
SIKDEEYFLLPVELEFGKPNNGRSDCVKIPSYLQLKEVLNLAPVTVDDEDLGKQVIREDL
KAEITYKIEISKYCAIPHEVCSSISTSMLEFCESAEYTPYLKDEMEVPLTPPCRQERSWV
NFLCRGLQEEPISLSGNSILIAEPCREFLESLVWQSEKYQDNMSSLLLVEHPAVNLVHQH
HSLTELQKELPLEVEAPMLGSLEEVWWLHSGLNPAAVEILEQFNMGGSSPNSLLPTEVET
FTQFTSYQIERWLEEKNSVTNQELLSAERHQSEKVVNPNLSLQIQRQYFHMSSVSSAKIH
STNTSVEELTGGSIRKIKTEEAINFLNQEKETPKPSESDSCKVVSSKLDNSFCSGKPASL
ASKWANDDSDLNNFIMMRSRHTVTQREEKYYVDRPEEVVQPEEQHTHVHKEDDSFCETLK
IEEKTQENEDSITVNIQPSESQCQAYCLLEEAAIPVLKDLTHLGVLASVTWSFDSVKFDH
TRFFLKQQEKVICDNFKQGKIDEKEIMLFRHAALVHLLVTVRDLLLTCGLDTALGYLSKA
KDIYKNILESCLNNIWRQLKIVQYSNQKKHETHPKITALQCEILNWMKSYGEKHSVKILI
ITRMDSEREKADFIHPLSRIEAGLKAVDLNSEKKGSPLSCKEIISNLSRYSCIVVHNQQI
GADFPWTHFSLAMEYDYSENSGWKNLCKNLNVTYMTFKTNLPETIQMGNHGGSFLLEVQI
PYVFLTTEGLLNMPDILQLFESKYSITFVERSSSYSLRLFGGTDRYVVLTVDECTAIFLQ
SMEELNCEDSCDTVISRLMALSLQYMCCWIIFYSRERLSLEYSLKGNTLLNLVLIYATLI
ELTQKSEGFEVKVVLTPGIEETAVIVRQIADSILIASNTSPDEWLDKSWLSVLPSETEKC
LLTFPCINPLVAQFMLQKGSSLNKLFLASFDQLQELLPAVPKKVLKHFRDMISSYSLNTA
APLEKTVKSASHPENQNKFNTLHPDNKQNFQILELLDKAQTRTGTSHMNSEALIPPLNHH
KGFFKSDLPSCMQKKACSSDVITRRKADLFAVSKDCEGFACLEVKNSLPVQREPFRMHDI
SDHTSKDSEKEDFFATFSDCALQERSKSFLEEFRDTTFKSPEIQIDQPLWNDSTSPDPCN
SFAHDGFLSDFFDDMDELQNLNFNQISGASKGKRKQRPPFLGTKEKNKADSGFPEVQEFK
KRRLTYERVPGRRDGQTRLKFF
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaaatgacacaaaacaagatatttccagctttgaattatcactcaacagactat
ttatatgagagcatggcaaggcagaagttttccatctggaaattatcactttgctttcct
ccctgtttacatcaagatgaaaagtatcatctcaatggactctttgctgatgagaagtat
aggaagccatggactagaatcggttcaatacagaacatgattgctatttcagtattggat
caatggaagaaaaatttacctgtggaggatttcctggaaaagaaacctatttcctctgta
gagtttcagactagtaattatttattagaagttattccgagttcaaatccttgctctcag
actgacacagaagaaccttttttacttatgaagaatggttttaaagaagactccacccaa
gacaaatatttgaagatttgctatgccactgaatttaaagaaccagggcaagatttgtgt
ttggaagaggagtttgtttttattgataatcttgaaaattttcgtaaaaaactgccaact
ttatctatacttctgagcagactacagttttttttagtgaaagatccaattttagattct
gaaggacagattttaacaggagagaatattttcagagaatgtttgacgttccaaaatgga
atgaagatggaaaagagtcaaaatgaattgctgggaattaaagagaacttctgtacaata
tctataaaagatgaagagtatttcctgttgcctgttgagttagaatttggcaaacccaac
aatggcagatctgattgtgttaagattccatcatatttacaacttaaggaggtgttaaat
ttagctccggtcactgtagatgatgaagaccttggcaaacaagtgatcagagaagatctc
aaagcagaaattacatacaaaatagaaatttccaagtactgtgccattccacacgaggtt
tgctccagtattagcacaagtatgttggaattctgtgagtcagctgaatatactccatat
ttgaaagatgaaatggaagtgcctttaactcctccatgcagacaagaaaggtcatgggtt
aattttctgtgcagaggacttcaagaagaacctatttctctctctggtaacagtatttta
attgcggagccctgtagggaattcttagaatctttggtatggcagtcagagaagtatcag
gataatatgagctctcttctgcttgtcgagcatccagctgttaaccttgtgcatcagcat
cattcactgacagaactgcagaaagagctgccacttgaggtcgaagcaccaatgcttggt
tcactagaggaggtctggtggcttcatagtggtctaaatccagcagctgtagaaattttg
gaacaatttaatatgggtggaagtagtccaaacagtctgcttcctacagaagtagaaaca
ttcacacaatttacatcatatcaaatagaaagatggcttgaagagaagaattctgtgaca
aatcaagagctgctttctgctgaaagacatcagtcagagaaagtagttaatcctaacctg
tcactgcagattcaaaggcagtactttcacatgagttctgtatcatctgccaaaattcac
agcacaaatacatctgtggaagagcttactggaggaagcataaggaagattaagacagaa
gaggcaattaatttcttaaaccaagaaaaggaaacccctaaaccttctgaatcagacagc
tgtaaagttgtgtcttctaaactagacaactcattctgtagtggaaagcctgcatcactt
gcttctaaatgggccaacgatgattctgatctgaacaactttattatgatgagatctaga
catacagtcacccaaagagaggaaaaatattatgtagatagacctgaagaagtggtacag
cctgaagaacagcatacgcatgttcacaaagaggatgattctttttgtgagactctaaaa
atagaggaaaaaacccaagagaatgaagacagtatcactgtcaatattcaaccatcagaa
agccagtgccaggcatactgcctcttggaagaagcagccattcctgtactaaaagatttg
acacatctgggtgtacttgcttctgttacttggagctttgacagtgttaaatttgatcac
acaagattttttttaaaacagcaagagaaagtgatatgtgataattttaaacaaggtaaa
atagatgagaaggagatcatgctgttcagacacgccgctctggtacacctgctggtgaca
gttcgagatctgttactaacatgtggcttggatacagccctaggttatttgtccaaggca
aaggatatctataaaaacattttagaatcctgtttgaataatatctggaggcagttgaag
attgtacagtacagcaaccagaaaaagcatgaaacacatcccaaaataacagcacttcag
tgtgaaatattaaattggatgaaaagttatggagagaaacacagtgttaagatattaatc
attacaaggatggactctgaaagagaaaaggctgatttcattcatccgttatctcggata
gaagctggtttgaaagctgtggatttgaattccgagaaaaaaggaagccctttaagttgt
aaagagatcataagcaatcttagtagatattcctgcattgttgtacataatcagcaaatt
ggagctgacttcccttggacacacttctcattagcaatggaatatgattattctgaaaat
tctggctggaaaaatctgtgcaaaaatctgaatgttacatacatgacttttaaaaccaac
ctccctgaaacaatacaaatgggtaatcatggtggttcctttcttctggaagtacagatt
ccatatgtatttctgacaactgaaggtcttcttaatatgccagatattcttcagcttttt
gaatccaagtacagcattacctttgttgaaagaagcagtagttactccttaaggctcttt
ggaggtacagatcgatatgttgtgttgacagtagatgaatgtactgctatctttttgcag
agtatggaagaactaaattgtgaggactcctgtgacactgtaatatcgagactgatggca
ttatcactccaatatatgtgctgttggattattttctattccagagaaagactgagttta
gagtacagtctcaagggaaatactctgcttaaccttgtcttaatttatgccactctaatt
gaacttacacagaagtcagaaggctttgaagtgaaggtagttcttacaccagggattgaa
gagacagcagtgatagttcgtcagattgctgacagcattttgatagcatctaataccagt
cctgatgagtggctggacaaatcctggctttctgtcttgccctctgagacagagaaatgc
ctgcttacttttccatgtatcaatcctttggttgctcagtttatgttacagaagggatct
tcattgaacaagttatttcttgcaagctttgatcaactccaggaacttctgccagcggtt
ccaaaaaaagttttaaagcatttcagagacatgatatcttcatacagccttaatactgct
gctcctctagaaaaaacagtgaaaagtgcatcacacccagaaaaccagaataaattcaac
acattgcatcctgataataaacaaaattttcagattttagagctgcttgataaggcacaa
accagaacaggaacatctcatatgaattccgaagccctaattcctccactgaatcatcat
aaaggcttttttaagtctgatcttccaagttgtatgcaaaagaaagcatgctcatcagat
gtaattacaaggaggaaggctgatttgtttgctgtatcaaaggactgtgaaggttttgct
tgtctagaagttaaaaattctctccctgttcaaagagagcccttcaggatgcatgatatc
tctgatcatacttccaaagactctgaaaaagaggatttctttgcaactttcagtgactgt
gcacttcaggagaggtctaaaagttttctagaagaatttagagacacaacttttaaaagc
ccagaaattcagattgaccaacccctgtggaatgattctacatccccagacccatgtaat
tcatttgctcatgatggttttctctctgatttctttgatgatatggatgagcttcaaaat
ctgaattttaaccaaatcagtggagcatctaaaggaaagagaaaacaaaggcctccattc
ttagggacaaaagaaaaaaataaagcagattcaggatttccagaagtacaggagttcaaa
aaaaggagattgacatatgaaagagtccctggaagaagagatggacaaacgcgccttaaa
ttcttttga
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