KEGG   Cinclus cinclus (white-throated dipper): 134056715
Entry
134056715         CDS       T10813                                 
Symbol
EXOSC5
Name
(RefSeq) exosome complex component RRP46
  KO
K12590  exosome complex component RRP46
Organism
ccic  Cinclus cinclus (white-throated dipper)
Pathway
ccic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    134056715 (EXOSC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccic03019]
    134056715 (EXOSC5)
Messenger RNA biogenesis [BR:ccic03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     134056715 (EXOSC5)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 134056715
NCBI-ProteinID: XP_062369569
LinkDB
Position
Z:complement(503445..505519)
AA seq 221 aa
MAVELETACGQCRLRPFSCELALLSRPDGSATFLQGDTSVLAGLYGPAEAKVSKELPDRA
ALEVLLRPKVGLPGVLERSREQLLRQTCEAVILGVLHPRTAISLVLQVLSDAGSLLSCCL
NAACMALLDAGLPLTTLFCGVTCALQPDGTILLDPTARQEQEARATLTFAIASREKKVLM
ATTKGSCSVEEMQQCLATAQRAADTIFQFYRDSVRRRYSKS
NT seq 666 nt   +upstreamnt  +downstreamnt
atggcggttgagctggagacggcgtgcgggcagtgccggcttcgccccttctcctgcgag
ctggcgctgctctcgcggcccgacggctcggccaccttcctgcagggtgacacctcggtg
ctggccgggctatacggccccgcagaggccaaggtcagcaaggaactgccggaccgggca
gcgctggaggtgctgctgcgccccaaggtggggctgccaggtgtgctggagcgcagcagg
gagcagctgctgcgccagacgtgcgaggctgtgatcctgggggtgctgcacccccgcacc
gccatctccctggtgctgcaggtgctcagcgatgctggctctctgctatcctgctgcctg
aatgctgcctgcatggcgctgctggatgcggggctgcccctcaccaccctcttctgtggt
gtcacctgtgccctgcagcccgatggcaccatcctgctggacccaacagcccgccaggag
caggaggcccgtgccaccctcacgtttgccatcgccagcagggaaaagaaggtgctgatg
gccaccaccaagggcagctgctctgtggaggagatgcagcagtgcctggccacagcccag
cgtgctgctgacaccatcttccagttctaccgcgactccgtgcgccgccgctactccaag
tcctga

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