Cinclus cinclus (white-throated dipper): 134057051
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Entry
134057051 CDS
T10813
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ccic Cinclus cinclus (white-throated dipper)
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccic03021
]
134057051 (CHD1)
03036 Chromosome and associated proteins [BR:
ccic03036
]
134057051 (CHD1)
Transcription machinery [BR:
ccic03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
134057051 (CHD1)
Chromosome and associated proteins [BR:
ccic03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
134057051 (CHD1)
SLIK complex
134057051 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
134057051
NCBI-ProteinID:
XP_062370040
LinkDB
All DBs
Position
Z:9757160..9811881
Genome browser
AA seq
1811 aa
AA seq
DB search
MNGHSDEESVRNSSGESSRSDDDSGSASASGSGSSSGSSSDGSSSQSGSSDSDSGSESGT
QSESESDTSREKKQIQSKPPKADGSEYWKSSPSILAVQRSAVLKKQQQQQKAVSSDSVSE
EDSSSSEDSADDSSSETKKKKHKDEDWQMSGSGSLSGTGSDSESEEDREKSSCEESESDY
EPKNKVKSRKPPTRIKPKSGKKNAGPKKRQLNSSEDEEEEEEEDDDYDKRGSRRQATVNI
SYKEAEETKTDSDDLLEVCGEDVPQPEEDEFETIEKFMDSRVGRKGATGAATTIYAVEAD
GDPNAGFEKSKEPAEVQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETK
RWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSE
CSWEDGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLE
LRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLS
TLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDK
SFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFI
MPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSA
LQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEAL
QHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKG
ELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHR
IGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPF
NKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFK
VANFSNMDEDDIELEPERNSRNWEEIIPEVQRRRIEEEERQKELEEIYMLPRMRNCAKQI
SFNGSEGRRSRSRRYSGSDSDSVSERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKK
FGGPLERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSAGQERAGGRLGKVKGP
TFRISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSN
LLIGIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARK
EAQRLAGAGNSKRRKTRTKKNKVLKSAKFKEEIKSDSSPQLSEKSDEDDDENNKDEIVSM
KHPRKKFKAEKENEEKPEPDTGIKKEAEEKRETKEKENKRDLKREKKEKEDKKELKEKDI
KEKRENKVKESTQKEKEVKEEKINEVKSENKEKTKKIPLLDTPVHITASSEPVPISEESE
ELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTN
PEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQQNDQNISGNVNTHVIRHP
DVERLKENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDAYKKSDSRKRPYSAFSNGKDH
RDWDHYKQDSRYYSDNKHRKLDDYRSRDHRSSVEGSLKDSRVHSDHRSHSDHRTHSDHRS
SSEYSHHKSPRDYRYHSDWQMDHRASGSGPRSPLDQRSPYGSRSPLGHRSPFEHSSDHKS
TPEHTWSSRKT
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagtgatgaagaaagtgtaagaaacagtagtggagagtcaagtcggtca
gatgatgattctgggtcagcgtcagcttctggatctggttcaagctctggaagtagtagt
gatggaagcagcagccagtcaggcagcagtgactctgactctggttcagagtcaggcact
caatcagaatcagagtctgacacatcaagagagaagaaacaaattcagtctaaaccacca
aaagctgacggatctgagtattggaagtctagtccaagtatacttgctgtgcaaagatca
gcagtgctcaagaagcagcaacaacaacaaaaggcagtctcatcagacagtgtttcagaa
gaggattcctcaagtagtgaagattcagcagatgactcgtcgagtgaaaccaagaagaaa
aaacataaagatgaagattggcaaatgtcaggatcgggatccctatcaggaactggttca
gattctgaatcagaggaagacagggagaaaagcagctgtgaagagagtgaatctgactat
gagccaaaaaacaaggtcaaaagtaggaaacctccaaccagaattaagccaaaaagtggg
aaaaagaatgcaggaccaaaaaagaggcaacttaattcatcagaggatgaggaggaggag
gaggaggaggatgatgattatgataagaggggatctcgtcgccaggcaacagtcaatatt
agttacaaagaagctgaagaaaccaagacggattctgatgatttgctagaagtttgtgga
gaagatgtaccacaacctgaagaagatgaatttgaaacaatagaaaaatttatggatagt
cgagttggccgtaaaggagccacaggtgctgcaactacaatatatgcagttgaggcagat
ggtgacccaaatgctgggtttgaaaaatcaaaggagccagcagaagtacagtatcttatt
aaatggaaaggttggtcacacatccataacacttgggaaactgaggaaacactgaagcaa
caaaatgttaaaggaatgaagaaactggacaattacaagaaaaaggatcaggaaacaaag
cgatggctgaaaaacgcttctccagaagatgtggaatattacaactgccagcaggagctt
acagatgatctacataaacaataccagatagtggaaagaataattgctcattcaaatcag
aaatcagctgctggttatccagactactattgtaagtggcaaggtctgccttactctgaa
tgtagctgggaagatggagctctcattgccaaaaagtttcaggcacgcattgatgagtac
ttcagcagaaatcagtccaagaccactccctttaaagattgcaaggttctaaaacaaagg
ccacggtttgttgcactaaagaagcaaccatcttacattggaggacacgaaagtttagag
ttaagagattatcagttaaatggtttgaattggcttgctcactcatggtgcaaagggaat
agctgtattctcgctgatgaaatgggtctgggtaaaacaatacaaacaatttcttttctg
aactatctgtttcacgagcaccaattgtatgggcctttcttgctggttgtgccactttct
accttgacgtcttggcaaagagagattcaaacctgggctcctcagatgaatgctgtagtt
tacttgggagatataactagtagaaatatgataagaactcacgaatggatgcatccacag
accaagcgattgaaatttaacatactcttaacaacatatgaaattttgctaaaggataag
tcattccttggtggtctgaattgggcattcataggagttgatgaagctcatcgtttaaaa
aatgacgactctcttctgtacaaaactttaattgactttaagtctaaccatcgtcttctt
attactggaacccctctgcaaaactctctcaaagagctttggtctttactgcacttcatc
atgccagaaaagttttcctcatgggaagattttgaagaggagcatggcaaagggcgagag
tatggttatgcaagtcttcacaaagaacttgaaccatttctgctgagaagagttaaaaaa
gatgtagaaaagtctttacctgctaaagttgagcaaattctgaggatggaaatgagcgcg
ttgcagaagcagtactataaatggattttaaccaggaattataaagcccttagtaaaggt
tcaaaaggcagtacctcaggtttcttgaacatcatgatggaactcaagaagtgttgcaac
cattgctacctcattaaaccaccagatgataatgaattctataataaacaggaggcctta
cagcatttaatacgtagcagtgggaaactaatccttcttgacaagctactgattcgtctg
cgagaacgtggcaacagagtcctgattttctcacagatggtaaggatgctggacatcctg
gcagaatatctgaaatatcgtcaattcccatttcagagacttgatggatccataaaaggg
gaattgaggaaacaagcactggatcattttaatgcagaaggatcagaggacttctgcttt
ttactgtctaccagagctggaggattaggtatcaacttggcatctgctgatactgtggtt
atatttgattctgactggaatccacagaatgatcttcaagcacaggctagagcacataga
attggacagaagaaacaggttaatatttatcgactagtcacaaaaggatcggtagaagaa
gatattcttgaacgagccaagaaaaagatggtgttagatcatttagttattcagagaatg
gacactacagggaaaactgtgttacatacaggctctactccatcgagctcgacacctttt
aataaggaggagttgtcagcaattttgaagtttggtgctgaggaactttttaaagaacca
gaaggggaagaacaggagcctcaagaaatggatatagatgaaatactgaagagggctgaa
actcgggaaaatgagccaggtccattaactgtaggagatgagttgctttcacagttcaag
gtggccaacttctccaatatggatgaagatgatattgagttggagccagaaagaaattca
agaaattgggaagaaatcattccagaggtccagaggcgcagaatagaagaggaagaaaga
caaaaagaacttgaagaaatatacatgcttccaaggatgagaaactgtgcgaaacagatt
agcttcaatggcagtgaagggaggcgcagtaggagtagaagatactctggatctgatagt
gactccgtctcagaaagaaaaaggccaaaaaaacgtggaagaccacgaactattcctcga
gaaaatattaaaggatttagtgatgcagagataaggcggtttatcaagagttataagaaa
tttggcggccctctggagaggttagatgctgtagctagagatgctgagctggttgataaa
tcagagacagatctcagacgtttgggagagcttgtacataatgggtgcattaaagcctta
aaggacaactcagctggacaagaaagagcaggaggtagacttgggaaggttaaaggccca
acattccgaatctcaggagtgcaagtaaatgccaagttagtaatttctcatgaagaagag
ttggcgccattgcataaatccattccttcagatccagaagaaagaaaaagatatgtcatc
ccatgccacactaaggctgctcattttgatatagattggggtaaggaagatgattccaat
ttgttaataggcatctatgaatatggttatggcagctgggaaatgataaaaatggatcct
gatctcagtttgacacagaagattttgcctgatgacccagataagaaaccccaggcaaag
cagttacagacccgtgcagactacctcattaaattgctgaataaagaccttgcaaggaaa
gaagcacaaaggcttgctggagcaggcaattcaaagaggaggaaaacaagaactaagaag
aataaggtgctaaagtctgcaaaatttaaagaagaaataaaaagtgattcttcaccacaa
ctctcagaaaaatcagatgaagatgatgatgagaataacaaggatgagattgtttcaatg
aaacatccacgtaaaaaatttaaagcagaaaaagaaaatgaagaaaagcctgagccagat
actggtataaagaaggaagctgaagaaaaaagagagacaaaagaaaaggaaaataagagg
gatttgaaaagggagaaaaaagaaaaagaggataagaaagaattaaaagaaaaggatatt
aaagaaaagagagaaaacaaagtaaaagaatccacacagaaagaaaaagaagtaaaggaa
gagaagataaatgaagtcaaatcagaaaataaggaaaaaactaaaaaaattccattgctg
gatactccagttcatattactgcatctagtgaaccagttcctatatcagaagaatctgaa
gaactagatcagaaaacttttagtgtgtgcaaggaaaggatgaggcctgtcaaggcagca
ttgaaacagctggatcgaccagagaagggcctttctgaaagagaacagctggaacatact
agacagtgtcttatcaaaattggggatcatattactgaatgtctcaaggagtacaccaat
cctgaacaaattaaacagtggagaaaaaatttgtggatttttgtctctaagtttacagaa
tttgatgccagaaagctgcacaaactgtataaacatgcaatcaaaaaacgtcaggaatcg
cagcaacaaaatgatcagaatattagtggcaatgtgaatacacatgtaattagacatcca
gatgtggaaagactgaaggagaatacaaaccatgatgacagtagtagggacagctactcc
tctgatagacatctgtcacaataccatgatcatcataaagacaggcatcagggagatgca
tacaagaaaagtgactccaggaaaaggccctattcagccttcagcaatggaaaagatcac
agagactgggatcactacaaacaagacagcagatactacagtgataataaacatagaaag
ttagacgactacaggagcagagaccacaggtcaagcgtggaagggagtctaaaagacagc
cgggttcattcggatcaccgttcccattcagaccacaggacgcattcagatcaccgttcc
tcttctgagtacagccatcataaatctcccagagattataggtaccactcagactggcaa
atggaccacagagcttcaggtagtggcccaaggtcaccactggatcagaggtctccttat
ggttcaagatctcccctaggtcacagatctccatttgaacattcatcagatcacaaaagt
acacctgaacatacatggagtagccggaaaacataa
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