Cinclus cinclus (white-throated dipper): 134057690
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Entry
134057690 CDS
T10813
Symbol
SPATA13
Name
(RefSeq) spermatogenesis-associated protein 13 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
ccic Cinclus cinclus (white-throated dipper)
Pathway
ccic04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ccic00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
134057690 (SPATA13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccic04131
]
134057690 (SPATA13)
Membrane trafficking [BR:
ccic04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
134057690 (SPATA13)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
PH
SH3_1
SH3_9
SH3_2
RHG20_PH
PH_5
Motif
Other DBs
NCBI-GeneID:
134057690
NCBI-ProteinID:
XP_062370654
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All DBs
Position
2:complement(47852050..47893300)
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AA seq
1216 aa
AA seq
DB search
MRFFTTPRKRANSSSDRPRSLVLMGNSSTWNAFSSIRKMGSFKKLKSSIQQGIQTRDCSD
ILNENSIGKHGSNGAVVRVQTNRYSYSGSLHDFQNTVDGLASDCSDVEESDESFLRNTHR
SRSIRRAYGAGRINLLDTDKVQSRHNCVRPTSPVIPEPKICEILVKDSENNRIIYWRSRS
SDNLNFLKKNSFKRKSTSNLADLKVANEKQVPARTVSVASADSDKSGGNPERRSKRWKSP
IRAKDFDRVLKLVSNVTDVARKKDGPKNMAPSPSELSQRTRSNSRLHDDYSRRVSSSTDH
DRKRCASSISSPDSSLPGTPCLQSPVIAQDKEAEINLVVTEDRSLRMSSGIPDSDSFSPT
LNDISPFPNEVFYSDSDEPKATHQYMDEAENLHVPVRPTTPKPQSPTAGGKVKCSVNFQC
PNHHSTLSLSSSESEDRVEVSGLKLGRNPVCFQDSVQTVYYDDGNEDSGISSHSQLSLNL
ASGTEEKKEEVVSDDHWKKSASQDEEKADSQKVTPRKWGSGRRSRPRPLSDYGQMSVRSF
SIPEDSVAVESQRIDCTDGENQPGMASIGSVIQSNTVGYHRGRKRRPISVIGGVNFYGDA
QVEERENLLTQPVTRPPVPAHKVPPYKAVSARFRPLTFSQSTPIGLDRVGRRRQMRASNV
AADGATESSALVDDNGSEEDYSYEELCQAAPRYLQPGGEQLAINELISDGTIVYAEALWD
HVTMDDQELGFKAGDVIRVLEASNKDWWWGRNEDKEAWFPASFVRLRVNQEEVPENCSNI
QDEEQDSDISKHRQKIAENRDQMRTNVIQEIMKTERVYIKHLKDICEGYIRQCRKHTGMF
TTAQLSTIFGNIEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLQHQEGFAIYSEYCNN
HPSACIELSKLMKQGKYRHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYT
TQEHSDYSNIKAAYEAMKNVACLINERKRRLESIDKIARWQVSIVDWEGPDVLARSSELI
HSGELTKISKQGKSQQRTFFLFDHQLVFCKKDLLRRDILYYKDRIDMDEMEIVDTEDGRD
KDFNINVKNAFKIINRTTEEIHLFCAKKQEDKKRWMEACESERRRVREDKEMGMEISENQ
KKQAMQNARKSRQGRIKGGYNGCPMPPPHQTLHPLHQRHITVPTSVPQQQVFALAEPKRK
PSLFWHTFNKLTPFKK
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgcgctttttcactacccctcggaaacgggctaattccagctctgacaggcctcgttct
ctggttttgatgggcaactcatccacgtggaatgccttttcttctatcagaaagatggga
tctttcaagaagttaaaatcttcaattcaacaaggaattcaaacaagggactgctcagac
atcttaaatgagaacagcataggcaaacatggttcaaatggagcagtggtgcgagttcag
actaacaggtattcctattcgggatctctgcatgatttccagaatacagtggatggtttg
gcttctgactgctctgatgtggaggagagtgacgagtccttcctgaggaacactcatcgc
tcacgcagcatcaggcgggcttacggtgctggccgcataaacttgctagatacagataaa
gttcagagtcgccacaactgtgttaggccaacatcacctgtcatcccagagccaaagatt
tgtgagattttggtgaaagactctgaaaacaacaggatcatatattggagaagcagaagt
tcagataatttgaactttctgaagaaaaactcgttcaaacggaagtccacctcaaacctt
gctgatctgaaggttgcaaatgaaaaacaggtgcctgcaaggactgtgagtgttgcttct
gctgactctgacaaaagtggtggaaaccctgagaggagatccaagcgatggaagagccct
atcagagcgaaggattttgaccgagttttgaaacttgtcagtaatgttacagatgttgca
aggaagaaggatggccccaagaacatggctccttctcccagtgagctgtcccagagaaca
aggtcaaacagcaggctgcacgatgactactcccgcagggtttccagcagcacagatcat
gacaggaagagatgtgcctcctcgatatccagtccagactcttccttgccgggaacacct
tgcctgcaaagccctgtgattgctcaggataaagaggctgaaattaatttagttgtcact
gaagatagaagcctcaggatgtcatcaggtatcccagactctgatagcttttcacctact
ctgaatgacattagtccatttcccaatgaagtcttctattcagactcagatgagccgaaa
gctacccatcagtatatggatgaagctgaaaaccttcacgttccagtcaggccaactact
ccaaagcctcaaagtccaactgcagggggaaaggtcaagtgcagtgtcaatttccagtgt
ccaaaccatcacagcacattgtctctgagttcatcggagagcgaggacagagttgaggta
tcgggactgaagctgggcaggaatcctgtttgcttccaggactcagtgcaaactgtgtac
tatgatgatggaaatgaagacagtggcataagcagccactctcagctgagcctcaattta
gcatctggtactgaagagaaaaaagaagaggttgtttctgatgatcactggaagaagtcc
gcgtcccaggatgaagaaaaggcagactcacaaaaggtcacacccaggaaatggggctct
ggaagaagatcccggcccagacctctctcagactacggccaaatgtcagtccgaagtttc
tctataccagaagattcagttgcagtggaatctcagaggatagactgcacggatggagaa
aatcagccaggaatggcatccattggatctgtgatccaaagcaatactgtaggctaccac
agagggcggaaaaggagacccatctctgtaataggtggagtcaatttctatggagatgct
caagtagaagagagagaaaatctgctgacacaacctgtgacacggccacccgttccagca
cacaaggtgcccccgtacaaggctgtttcagcaaggttccggccactcaccttctcacaa
agtacccccatcggcttggaccgggtgggacggaggcggcagatgagagcatctaatgta
gctgcagatggtgcgactgaatcttcagccttagtggatgacaatggtagtgaggaagat
tacagctacgaggagctctgccaagctgctcccaggtacctgcagcctggaggggaacag
ctagcaattaatgagctgataagcgatggcaccatcgtctatgcagaggctctgtgggac
catgtcactatggatgatcaagagctgggcttcaaagctggagatgtcattagagttcta
gaagcttctaacaaagactggtggtggggaagaaatgaggataaggaagcctggtttcca
gccagctttgtcaggctgcgagttaatcaggaagaagtgccagaaaattgtagtaatatc
caggacgaagaacaagattcagatatcagcaagcatcgccagaaaatagctgaaaacagg
gatcagatgagaaccaacgttatacaggaaattatgaaaacagaacgagtctatatcaag
catctcaaggacatctgtgagggttacattcggcagtgtcgcaaacatacgggaatgttc
accaccgctcagttaagcaccatttttggaaatattgaagatatttacaagttccaaagg
aagtttctgaaggatcttgagaaacagtacaacaaagaggaacctcatctaagtgaaata
gggtcatgttttcttcaacatcaagaaggctttgctatttattcggagtattgtaacaat
catcccagtgcctgcattgaactctccaaactgatgaagcagggcaaataccgccacttc
tttgaggcctgtcgcttgctgcagcagatgattgacattgctattgatggttttcttctc
acacctgttcagaaaatctgcaaatatcctctgcagcttgcagaattgctcaaatacacc
actcaggagcacagtgattatagcaacataaaagctgcatatgaggccatgaagaacgtg
gcatgcctgatcaacgagcgaaaacggagactagaaagcatagacaagattgcacgctgg
caagtctctatcgtagactgggagggaccagacgtgctagccagaagctcggaactgatc
cactcaggagaactgaccaaaatatcaaaacaaggcaaaagccagcagaggactttcttc
ctttttgaccatcagcttgtcttctgtaagaaagacttgctgagaagggacatcttgtat
tacaaggatcgtattgacatggatgagatggaaattgtggacaccgaagatggtagagac
aaagattttaatatcaatgtcaagaatgcttttaagataataaacagaacaacagaagag
attcatttgttctgtgcaaaaaaacaggaggataaaaagagatggatggaggcatgtgaa
agtgaaaggagaagagttcgagaagacaaggaaatgggtatggaaatctcagaaaaccag
aagaaacaagccatgcagaatgcccgtaagtcaaggcaaggaagaattaaaggtggctat
aatgggtgtcccatgcctcctccacaccaaaccctgcatccccttcaccagcgacacatc
accgtgcctaccagtgtcccgcagcagcaggtctttgccctggcagagcccaagcggaag
ccatccctcttctggcataccttcaacaaactcactccctttaaaaagtga
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