KEGG   Cinclus cinclus (white-throated dipper): 134057917
Entry
134057917         CDS       T10813                                 
Symbol
UPF3A
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 3A
  KO
K14328  regulator of nonsense transcripts 3
Organism
ccic  Cinclus cinclus (white-throated dipper)
Pathway
ccic03013  Nucleocytoplasmic transport
ccic03015  mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:ccic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     134057917 (UPF3A)
   mRNA cycle factors
    P-body specific factors
     134057917 (UPF3A)
SSDB
Other DBs
NCBI-GeneID: 134057917
NCBI-ProteinID: XP_062370944
LinkDB
Position
2:complement(91434056..91460327)
AA seq 622 aa
MGTAIRAAYHDAVPWQFLTKPGTKVRRCRLEELSLLRGLRDGLECIAGQALLLNYRIILP
ARILATLHTLHPKIMNDTPLRLGALPSSSGTKKRTGTDPPLPARPRGGSLPRALRPFSRG
FRAAAGAGSVRSGREAGPGRAGGRDARLMDPPLLQESPRRDTAAPPNPPVPLPSPPSPLP
PPLHPAPGKQREEKKTALSKVVIRRLPPCLTKEQLEEQLHPLPAHDYFEFCTADPSLYPH
LYSRAYINFRNPEDILLFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAG
SIEDDPEYRKFLENYCADEDKICANPEILLGEIEAKTRELIARRTTPLLEYIKNRKLEKQ
RIREEKREERRRRELEKKRLREEEKRKRREEERRKRKEVEKQKKISEKEIRIKLLKKPEK
GDELASEKHKEKGEEADIEENKWDKSPGSGSIKSKSLESSLKELKDKSQNDSDKEQRDLE
RRFREKEPERQRYRLDDGRKHRTHYEFDKFMRRNEEELKWGKGYNQDRGKKGNYNYSFTV
EAVDKLGKEDKCDDMASKKERIRNKDRPAMQLYQPGARIRTHMGPTSKTYDCSGKSFEDA
LDKKYEADNSAGASSERTEEAE
NT seq 1869 nt   +upstreamnt  +downstreamnt
atgggcactgcaataagggcagcctatcatgatgctgtgccttggcagttcctgacgaag
ccgggcacaaaggtccgcaggtgccgtttggaagagctctcgctgctgcgtggcctcagg
gacgggctggagtgcattgcagggcaggcactgcttcttaattatcgcattatcctacct
gcacgcattttggctacccttcacacgctgcacccaaagattatgaatgacacacccctg
cggttgggagccctgccgagttccagcgggacgaagaaaaggacggggacggatcccccg
ctcccggccaggccccgcggggggagcctcccgcgggccctgcggccgttctcgcgaggt
ttccgcgcggctgcgggcgccggctccgtgcgctcggggcgggaggcggggccgggccgg
gccggcggccgcgacgcgcggctcatggacccgccgctgctgcaggagtcgccgcgccgc
gacacggccgctccgccgaacccgccggtgccgctgccttctccgccgtccccgctgccg
ccgccgcttcacccggcgccggggaaacagcgggaggagaagaaaacggcgctgagcaaa
gtggttattcgaaggcttcctccttgtctaaccaaggagcaactggaggaacagctgcat
cctctacctgcccatgattattttgagttttgcactgctgatcccagcctttatcctcat
ctctactcaagagcatacattaactttagaaatcctgaggacatccttctttttagagat
cgctttgatggctatgtcttcattgataataaaggtttggaatatcctgcagtggttgag
tttgctccatttcagaagatttcaaaaaagaagctgaagaagaaagatgccaaagctggg
agcattgaagatgacccagaatataggaaatttttagagaattattgtgctgatgaagac
aagatctgtgccaatcctgagattcttttgggagagattgaggccaaaacaagggaacta
attgctagaagaacaacaccccttttggaatatattaaaaatagaaaattagaaaagcag
agaatacgagaagagaaaagagaagaacgaaggcggagagaattggagaagaaacgtttg
cgggaggaagagaaaaggaagcgcagggaagaagaaagacgtaaaagaaaagaagtggag
aagcaaaagaagatttctgaaaaagaaataaggatcaagcttctcaagaagcctgaaaaa
ggagatgaactggccagtgaaaagcacaaggaaaaaggtgaagaagctgacattgaggaa
aacaaatgggataaatcacctggatctgggagcataaaatcaaaatctttggagagttca
ctgaaagaacttaaagataagtcacaaaatgatagtgacaaagagcaaagagatttggag
agaagatttcgagaaaaagaacctgaaaggcaaaggtatcgattggatgatggcagaaag
catagaactcactatgaatttgacaagtttatgagaaggaatgaagaagagctgaaatgg
gggaaaggatacaaccaagacagaggaaagaaagggaactacaactacagcttcactgtg
gaggcagtagacaaactgggtaaagaggacaagtgtgatgacatggcatccaaaaaggag
cgcataagaaataaggatcgtccagccatgcagttgtatcagccaggagctcgcatccga
acacatatgggacctacaagtaaaacctacgactgcagtgggaaatcctttgaagatgct
cttgataaaaagtatgaggcagataattcagctggagctagttctgaaaggactgaagaa
gcagaataa

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