KEGG   Cinclus cinclus (white-throated dipper): 134057920
Entry
134057920         CDS       T10813                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
ccic  Cinclus cinclus (white-throated dipper)
Pathway
ccic04382  Cornified envelope formation
ccic04510  Focal adhesion
ccic04512  ECM-receptor interaction
ccic04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ccic00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    134057920 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    134057920 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    134057920 (COL4A1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    134057920 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ccic04147]
    134057920 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:ccic00536]
    134057920 (COL4A1)
Exosome [BR:ccic04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   134057920 (COL4A1)
Glycosaminoglycan binding proteins [BR:ccic00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   134057920 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 134057920
NCBI-ProteinID: XP_062370947
LinkDB
Position
2:93704976..93772442
AA seq 1672 aa
MTTVKAIDCRVAYQLLYAYDIGGKGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQG
PEGPPGPPGLKGDTGEPGLPGTKGTRGPPGVSGFPGNPGLPGIPGQDGPPGPPGIPGCNG
TKGERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLVTPGVLKGEKGFPGQPGLPGPP
GASGFQGPMGPQGPPGEPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAP
HMKEKGSEIIKGEKGDPGEKGEQGIPGLPGSGFKGDKGEPGKPGPRGKPGKDGEPGLKGE
PGLPGGFGVPGRPGEPGTKGDKGERGYPGPPGRMIDAGPVDTFGEKGDPGVSGLPGLKGQ
KGEKGFPGAQGIPGLPGRPIPERVGSPGVPGERGEKGEKGSPGFPSPGIPGRDGFPGPPG
LPGPPGPPGKADGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGDKGEACALCDKVGPPG
LPGPQGPPGPAGFPGQAGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGAKGEPGDFTYDS
ILKGEKGDPGFPGQPGIPGREGRPGKDGFPGPQGPKGVAGTAGLKGERGPPGQPGFPGVR
GERGFPGPPGIGAAGLPGEKGDRGFAGTPGLPGLPGAKGEAGRTISLPGPPGADGLPGPP
GFPGPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPGTPG
LDGLPGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGNPGLPGLRGEQGFPGIPGQ
QGFRGDPGLPGLQGLQGPPGAPGLGPPGLPGPAGQPGPQGPPGFPGVKGERGFPGVPGLD
MPGPKGDKGSPGQPGVPGSVGLPGLPGPQGAVGLKGSAGPKGEMGVMGTPGLPGTPGPVG
DRGLPGEKGSPGFKGVIGPQGDPGVKGDKGEAGLPGKPGTIDTMDMVSLKGQKGDQGEKG
DHGEAGEKGLRGDYGEPGIPGRDGEPGTPGQPGPKGDQGPPGYPGDPGVPGQKGSVGEMG
LPGTPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGAPGEKGEPGRTGSPGL
SGDKGEKGSSGIPGMPGAPGPKGSPGMAGFPGNPGRHGEKGEKGLPGLSGIPGLKGEPGE
PGVPGPAGAIGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGAKGEVGFPGSP
GSPGIPGLKGEPGYAGPPGPKGSQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPG
PPGLKGAKGEQGSNGWPGTPGGPGMKGDPGFQGLPGTPGLPGDIGPKGDLGPPGVPGVPG
PKGTPGFPGLKGERGDQGLPGSKGLQGPPGPPGPFQLIKGDPGLPGPVGPVGLKGFPGLP
GPKGQQGVTGPSGVPGPPGSPGFDGQPGQKGEAGPYGPPGPRGFPGPPGPDGLPGVMGPP
GAPSVAHGFLVTRHSQTIEEPLCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKF
STMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAPAMV
IAVHSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECH
GRGTCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq 5019 nt   +upstreamnt  +downstreamnt
atgacaacagtaaaagcaattgactgccgagttgcttaccagttgctttatgcctatgac
ataggaggaaagggatgttccggttgtggaaaatgcgattgcagtggagtaaaagggcaa
aagggagaaaggggcttgcctggactacagggtgtgattgggtttcctggaatgcaagga
cctgaaggtccccctgggccaccagggcttaagggtgatactggagaaccaggactgcca
ggaacaaagggaacaagaggccccccaggagtatcaggctttccaggaaacccaggcctt
cctggcattcctggacaagatggccctcctggtccacctggtattccaggatgtaatggc
acaaagggtgaaagaggtccagtaggtcccccaggtttaccaggactgactggaagtata
ggacctccaggacctcctggaatgaagggagatccaggtgaagtgattggtcttgtaact
cctggtgtgctaaaaggtgaaaaagggtttcctggccaacctggactgcctggtccacct
ggagcttcagggtttcagggaccaatggggccacaaggtcctccaggagagccaggtccc
ccagggccaccaggacttccaggcgagaagggctacatgggcttgggctttcagggtccc
aaaggtgaaaagggtgaacaaggggtaaggggccctccaggacccccaggaccagcacct
catatgaaagaaaaagggagtgaaatcataaagggagaaaagggtgatccaggtgaaaag
ggcgaacagggaatcccaggattgccaggttcaggtttcaaaggagacaagggtgaacct
gggaagcctggtccacgtggaaagcctggaaaagatggtgaaccaggactgaaaggagaa
cctggtttgcctggagggtttggggttccaggacgacctggggagcctggcacaaagggt
gacaaaggggagcgaggttatccaggacctccaggaagaatgatagatgctggaccagta
gatacctttggtgaaaaaggagaccctggagtttcaggtttgcctggactgaaaggtcaa
aaaggtgaaaaaggcttccctggtgcacaaggaatcccaggacttccaggtcgaccaatt
ccagagagggtaggatcacctggtgtccctggagagagaggtgaaaaaggtgaaaagggt
tctccaggattcccttcacctggaatacctggaagagatggtttcccgggcccccccggg
ttgcctggcccaccaggacctccaggaaaagcagatggaattgatcagtgccagcaggga
gaacctggtgcaccaggtagtcctggacttccaggaagagatggatttccaggagagatg
ggagagaaaggtgacaaaggtgaggcctgtgccttatgtgataaagtaggacctcctgga
cttccaggaccacaagggccaccaggcccagcaggttttccaggacaagcaggttttaag
ggtgacagaggcttacctggacttgatggccttccaggggtgcctggcccccctggcact
ccagggcttatgggcagccccggggcaaaaggagaacctggagattttacttacgattct
atcctgaaaggcgaaaagggagatcctggtttcccaggacaaccaggcattcctggaaga
gaaggaagaccaggaaaagatggatttccaggtccccagggtccaaaaggagtggcgggt
acagctggcttgaaaggagaacgtggtccccctggccagcctggattccctggagtgcgt
ggtgaaagaggttttcctggccctcctggcataggtgctgcaggattacctggtgaaaaa
ggagacagaggctttgctggaaccccaggtttaccaggacttccaggagcaaagggtgaa
gcaggacgaactatatcgctccctggacctcctggggcagatggccttcctgggccacct
ggctttcctggaccccaaggtgacaaagggaatcctgggcttccaggtagacctggccta
ccaggagaaaaaggtgctgttgggcagccaggtatagggttccctggacctccaggtccc
aaaggtttccaaggtcagcctggttcacctggtctgccaggaactccaggaacccctggt
ctggatggtttgccaggagttccaggtttacaaggccaaaagggtgaacctggtgtaggt
ctacctggccctaaggggctgccaggcccccctggcccagctggcatccctggagaaaag
ggaaatccagggctgcctggtttacgtggtgagcaaggctttccgggcatacctggacag
caaggtttcagaggtgaccctggtctcccaggtctccaaggcttgcagggccctccaggt
gcaccagggctgggccctccaggattgccaggacccgccgggcagccaggaccccaggga
ccaccaggatttcctggagtaaaaggggaaaggggcttccctggtgttccaggtctagat
atgccaggaccgaaaggggataaaggtagcccgggccagccaggagtcccaggctcagtg
gggttacctggcctgccaggtccacagggggctgttggactgaaaggatcagcaggaccc
aaaggagaaatgggagttatgggaactcctggattgccaggaactcctggaccagttgga
gatcgagggttacctggtgaaaaaggtagtccaggtttcaaaggtgtaattggaccacag
ggtgatcctggtgttaagggagataaaggtgaagctggtctcccaggaaaacctggaaca
atagacaccatggatatggttagcctcaaaggccagaagggagatcaaggagaaaaaggg
gaccatggagaagcaggagaaaaagggctacgtggggattatggagagccgggaattcca
gggcgagatggcgaacctggtactccgggacaaccaggaccaaaaggtgatcaaggcccc
ccagggtacccaggggatccaggagttccaggacaaaaaggatcggttggtgaaatgggt
ttaccaggaacacctggagaaaagggtcttcctggagttccaggttcaccaggcacacca
gggttccctgggcaaaaaggtgaaaaaggagacaaaggagcaccaggctttcctggaatt
ggctttccaggggctcctggtgagaagggagaaccaggaagaacgggaagtccaggttta
tctggagataagggtgaaaagggtagttcaggaattcctggaatgccgggtgcccctggt
cccaaaggatcccctggcatggcaggatttccaggcaaccctggccgccatggggaaaag
ggtgaaaaaggacttcctggcttaagtgggattccaggtttaaaaggagaaccaggtgaa
cctggtgttccgggtcctgctggtgccattggtcagaagggtgaaccaggttatgatggg
attccaggtgcagctggtgcaaagggtgaacaaggtcttccaggtagagggcttccagga
tttcccggtgccaagggagataaaggtgcaaaaggcgaagtgggttttccaggatcccca
ggaagtccagggatcccaggcctgaaaggagaaccaggatatgcaggtccaccaggtcct
aaggggagccaaggtcttcctgggctgccaggaagtgcaattgaaggccctaaaggagac
agaggaccccaaggccaacctggtcttccaggtttaccaggtccaacagggccaccagga
cctccaggtctgaaaggggccaaaggagagcaagggagcaatggctggccagggactcct
gggggtccgggaatgaaaggtgatccaggtttccaaggacttccaggtactcctggtttg
ccaggagatattggtccaaaaggtgatctcggacctccaggagttccaggtgtaccaggt
ccaaaaggaactcctggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcct
ggatctaaaggtttacaaggcccaccaggcccaccaggtccttttcagcttattaaaggg
gatcctggcttacctggacctgtaggaccagttggtctcaagggattcccaggacttcca
ggtcccaaaggacaacaaggtgtgacaggaccttcaggtgtacctggaccacctggtagt
ccagggtttgatggtcaacctgggcagaaaggagaagctggtccttatggtcccccaggg
cccagaggattccctggtccacctggccctgatggcttgcccggggtcatgggcccacca
ggggcaccatctgttgctcatggcttccttgtcaccagacacagtcaaaccattgaagaa
ccattgtgtccatttggaacaaggctgatttaccacggctactccttgctttatgtacaa
ggcaatgaaagagcacatggccaagatctgggcacagcaggaagctgtcttcgtaaattt
agtaccatgcctttcttattctgcaatatcaacaacgtctgtaattttgcatcaaggaat
gactactcctactggctgtctactcctgaacccatgccaatgaatatggctcctatcact
ggtgataatatcagaccattcatcagcagatgctctgtgtgtgaagctcctgctatggta
atagctgttcacagtcaaacaatccaaataccaccatgtcctgaaggttggagttcactt
tggattggatactcctttgtcatgcacaccagtgctggtgcagagggctctggccaggcc
ctggcgtcccctggttcctgcctagaagagttccgcagcgctcccttcatcgaatgccat
ggccggggcacctgcaattattatgcaaatgcttacagcttctggcttgccactatagaa
aggaatgagatgttcaagaaaccaactccctcaactttgaaagccggggatctacgctca
aatgttagccgttgtcaagtctgtatgagaaaaacataa

DBGET integrated database retrieval system