Cephus cinctus (wheat stem sawfly): 107268004
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Entry
107268004 CDS
T07523
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ccin
Cephus cinctus (wheat stem sawfly)
Pathway
ccin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107268004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccin03019
]
107268004
Messenger RNA biogenesis [BR:
ccin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107268004
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107268004
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Phage_Mu_Gam
Motif
Other DBs
NCBI-GeneID:
107268004
NCBI-ProteinID:
XP_015595771
UniProt:
A0AAJ7BW39
LinkDB
All DBs
Position
Unknown
AA seq
739 aa
AA seq
DB search
MARAKNTQENREIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRL
RDQIKSWIASGEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQ
KEREEVSNWLANSIDALNLQLDTFESEIESLLAGKKKRLDKDKQDRMDELKGKLEKHRYH
IRKLETLLRMLDNMSVEVNTIKRIKDDVEYYIESSQEPDFEENEYIYDDIIGLDEVELSG
VGIPSSATTDSNNSNETGGTPTSTNSGTSPIPSPPLSSTMHNHSSDSSTDTDKKTKPVKP
MAVRPLMNSQASIPMTGSTANIKPSLLLSSTPSKTIPMTSSHSSPSSISNHVATSNAGNF
ATVAASHSNSQTIHSTSSKTSSHSSENGLLSSSSSSSVTSSVAQPVQIAPISQPIVPLQQ
PVQQVSQQVSQSQSQHGQHSLPSQNHTSSEAELITPVPLSTSPQSTTSSRSSPLQPIMIN
TSTSSNNNNTISNSNSNTNSNNNNNNTSSTNNGSNNSCSPAPSTANGLIPKLPDGMSSLK
SIAQQVIVRAGLEIPASEPSRNIFDGSVKPTSATSEAHIPPLLGVAPLGPVPLQKEHQLQ
FQMMEAAYYHMPHPSDSERLRSYLPRNLCPTPSYYQQVQLPHSDTVEFFQRLSTETLFFI
FYYMEGSKGQYLAAKALKKQSWRFHTKYMMWFQRHEEPKVINEEYEQGTYIYFDYEKWGQ
RKKEGFTFEYKYLEDRDLN
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggcgagagcaaaaaatacacaagaaaaccgtgaaatagacaggtgccttaaaaaagta
acggagggcgtggagacattcgaggacatctggcaaaaggtccacaatgccacgaacagc
aatcagaaggagaagtacgaggccgatcttaagaaggagatcaagaagttgcagaggtta
cgcgaccagattaagagctggatcgcttctggcgaaattaaggataagagcacgcttctc
gattaccggaagctaatcgaaactcaaatggaaaggtttaaggtcgtcgagagggagacg
aaaacgaaggcttactctaaggaaggattgggagcagcgcaaaaactcgatcccgcgcaa
aaggaacgagaagaagtcagcaactggctcgcaaattctatagacgctcttaacttacaa
ctcgacacctttgagtcggagatcgagtctctattagcaggaaagaagaaaagattggat
aaagataagcaagacagaatggacgagcttaaagggaagcttgagaagcaccgataccac
atccgaaaactcgaaacactcctccggatgttggacaacatgtcggtcgaagtcaataca
attaagaggataaaggacgacgtggagtattatattgaatcctcacaggaacctgacttt
gaggagaacgaatatatctacgacgatattatcggtctcgacgaggtggaactctccggc
gtaggtataccatcatcggcgaccaccgacagtaataacagtaacgaaaccggtggtaca
ccgacatcaacgaattctggtacttcaccaataccatcgccgccgcttagctctactatg
cacaatcattcgagcgacagttccactgatactgataagaaaactaagcctgtgaaacca
atggcggtgagaccgctgatgaactctcaggcgagcattccaatgacgggaagcactgcc
aacataaagccgagtctgctgttaagcagcactccgagcaagaccattcccatgacatcg
agccacagttcgcccagttccatcagcaatcacgttgcgacgagtaatgccgggaacttt
gccaccgtcgctgcctcacacagcaactcccaaaccatccattctacctccagtaaaaca
tcctctcatagcagtgaaaacggtctgctctcgtcatcgtcatcgtcgagcgtaacgtcg
agtgtagcacagccggtgcagatcgccccaatatcgcaacccatagtcccattgcagcag
ccagtgcagcaagtgtcccagcaggtatcgcaatctcaatctcaacacggtcagcacagt
ctgcccagtcaaaaccacacgagtagcgaagcggaactcatcaccccggtgccgctgtcg
acctcgccacaatccaccacgagtagtcgcagctcgcctctacagccaattatgatcaac
acgagcaccagcagcaacaacaacaacaccatcagtaacagtaacagcaataccaacagt
aacaacaacaacaataacaccagcagcacgaacaatggcagcaacaattcgtgctcacca
gcaccgtccactgccaacggtctcatccctaagcttcctgacggcatgtcctcgcttaaa
tctattgcccaacaagtcattgtccgagcaggtcttgagataccagcgtccgagccatcc
agaaacatcttcgacggctctgtgaaacccaccagcgccacttccgaggcacacattccg
ccgttattgggcgttgcgcccttaggcccggtgcccttgcaaaaggagcaccagcttcag
ttccagatgatggaggctgcctattatcatatgcctcatccttcggactcagaacggctc
aggtcttatttgccgagaaatctttgtcccacgccgtcttactaccagcaggtacaactt
ccccactcggacacggtcgagttcttccagcgtctctccacggagaccctcttcttcatc
ttctattacatggaaggctcgaagggtcagtatcttgccgcaaaggccttgaagaagcag
agctggaggttccacaccaagtacatgatgtggttccagaggcatgaggagcccaaggtc
attaacgaggaatacgagcaggggacgtacatttacttcgactacgagaagtggggccag
cgtaaaaaggaaggctttaccttcgagtacaagtacttagaggaccgagacctcaactaa
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