Cephus cinctus (wheat stem sawfly): 107269553
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Entry
107269553 CDS
T07523
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccin
Cephus cinctus (wheat stem sawfly)
Pathway
ccin03013
Nucleocytoplasmic transport
ccin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccin00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107269553
03015 mRNA surveillance pathway
107269553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccin03019
]
107269553
Enzymes [BR:
ccin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107269553
5.6.2.5 RNA 5'-3' helicase
107269553
Messenger RNA biogenesis [BR:
ccin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107269553
mRNA cycle factors
Common to processing body (P body) and stress granule
107269553
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
DEAD
Helicase_RecD
NPHP3_N
ATPase
SRP54
AAA_16
AAA_22
nSTAND3
AAA_10
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
107269553
NCBI-ProteinID:
XP_015599024
UniProt:
A0AAJ7C0K9
LinkDB
All DBs
Position
Unknown
AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDGAQSQQSQ
PVQVNGTSVASSLDLKISGAAQTLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECISNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSADEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGSSGIK
NKPGPRVGKLSQSEQNTQPYSQSGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgacgcgtacggacccagcagccagaccctcaccttcctcgacaccgaggag
gcagacctcatcggggccgatacccagggcagtgaatttgatttcacggattttacttta
ccatcgcctagccagactcaggcatcgcaacacgatggagcccaaagccagcaaagtcaa
cccgtgcaggtaaatgggaccagtgttgcatcttctttggatttgaaaatatcaggtgct
gcacagacattggctgagctgcagtttgaagaggaggaagaggaagcctattacaataga
gacttgccagaacatgcatgtaaatattgtggtatacacgaggcatcatgcgtagttatg
tgcaatgtctgtcgcaagtggttttgcaatggacgtggaaatacctcaggatcacatatc
atcaatcatctggttcgagccaaacacaaggaagtgacactgcacagagatggaccactg
ggtgagactgtgctagagtgttactcttgtgccgtgaggaatgttttcgttcttggattt
atacctgctaaggcagattctgttgtggtattgctctgtagacaaccatgtgctgcacag
agttcccttaaagatatgaactgggaccaggaacagtggaagccattaatagaagatcgc
agctttttagcatggcttgtgaagattccttcggaacaggaacaattacgcgcaagacaa
atatctgcacagcaaattaacaaattggaagaactatggcgcgacaatgtggacgcgact
ttccaggatttagagaaacctggggtagatgaggagccacagcaagtcttactgcgctat
gaagatggatatcaatatcaaaatatttttggacctctggttaaactggaagcagattac
gacaagaggctaaaggagtcccagacccaggagaacatcgaagtcagatgggacgttggc
ttaaataaaaagaccatcgcatactttatgttggcgaaaacagacggcgatatgaagtta
atgcacggcgatgaactcagattgcgttatctgggtgaacttcacaaaccatggtctggc
attggacacgtaattaaaattcctgataattacggcgaggaagttggaatagaacttaaa
aataattctggagctcctaccgagtgcatcagcaacttcgttgtggacttcatctggaaa
agtaccagttttgaccgcatgcaactggctttacggaaattcgccgtagatgacacttct
gtatccgcctacatataccatcgactgctgggtcacgaagtcgaagaggttcttttccgt
tgccatttgccgaagcacttcagtgctccgaacctacccgatttaaatagatcccaagta
tacgcggtgaaacacgccgtgcaacgaccattgtctctcattcagggtcctccaggaacc
ggaaaaacggtaacaagtgccactattgtctaccagctggtgaaacagaacggtggacca
gttctggtatgcgctccatcaaacactgcagtagatcagctcactgaaaaaattcacaag
tcgaacttgaaggtagtgcgcttatgcgcaaaatctagagaggccatagactctccagtg
agcttcctggcattgcacaatcaaatcaagaacatggaaacaaatactgaactgcaaaag
ctacagcagctaaaagacgagaccggcgagctttcaagcgccgatgagaaacgttataga
cttttgaaaaaagctgcagagaaagaactactagaagccgctgacgtaatttgctgcact
tgcgttggggcgggcgatcctcgattgcacagactgaaattccattctatcctgattgac
gaaagtatgcaggctacggaaccagagtgtatggttcctgtcgttttgggagcgaaacag
ctgatcctagtcggggaccactgccaactgggtcctgtggtcatgtgcaaaaaagctgca
cgggcaggattatctcagtcgttatttgaaagattggtagttctcggaatcagaccattc
cggctcgaggtccagtatcgaatgcatcctgatctttcacgatttccctcaaattttttc
tacgagggttcgctgcagaatggagtgtgtgcggatgagcggaagctcctgaagattgat
ttcccctggccagcacccgataagccgatgttcttctacgtgacccaaggccaggaagaa
attgctggtagcggaacttcctatctaaacagaactgaagcatcaaacgttgagaaaatc
acaacacgttttctgcgatgtggtgtaaagccagagcagattggagtgataaccccttac
gaaggtcaaagagcctacctggtacaatatatgcagtaccagggctccttacactccaag
ttgtaccaggagatagaagtagcgagtgttgacgctttccaaggccgcgaaaaagacatt
ataattatgtcttgcgtacgatcgaacgagcatcaaggaataggtttcctgaatgatccc
cgacgattaaacgtagctctgacgcgagccaagtacggaataataatcgtgggcaatcct
aaagtcctgtctaagcagccactctggaatcatctgctgagcttctacaaagaacagaag
gtgctagtggaaggaccactgaacaatctgaaggaatccatgattcaatttgctaaacct
aagaagctggtgaatgcagccaatcctggctcccacttcatgtccacgtccatgtacgac
gccagggaagcactgattccagggtcggtctacgaccgttctggcactcaagtgaacggg
acgcaaaatcataatccctactatcagaggaatgttcctctggacatcttcagtagaact
cacgacacaatcagctacataagtcctgaacgggctcaggcggcgatgaacaacgtgccc
gtacccgtaggcatgttcatgaacatggcccacgtcccaccgcgtttctacaaccagcat
cagcaagcactccaggcccggcagaaccagcgtaaccgtcgtggcagtagcggcatcaag
aacaaaccaggaccccgagttggaaagctaagccaaagcgagcagaacactcaaccgtac
agtcaatcaggattacccttgactcagggcaccacccaaggcatgtcgcaaccaggattc
agtctctcgcaacctggactcagtcaagctgaactctcccaggactcgttcgccgtcggc
gagttccagtcccagatggacggtctactttcccaggattcgacgtaccagggcgatcgg
agtgggttctatcaatccggtcagtcccaagctgggggccaattttcgcagccctattga
DBGET
integrated database retrieval system
