Cephus cinctus (wheat stem sawfly): 107270542
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Entry
107270542 CDS
T07523
Name
(RefSeq) uncharacterized protein LOC107270542
KO
K15542
polyadenylation factor subunit 2
Organism
ccin
Cephus cinctus (wheat stem sawfly)
Pathway
ccin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107270542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccin03019
]
107270542
Messenger RNA biogenesis [BR:
ccin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107270542
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_EML
WDR55
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_IFT140_1st
EIF3I
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
ASA1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
DSE1_N
Beta-prop_EIPR1
CFAP251_N
WD40_MABP1-WDR62_1st
WD40_RFWD3
eIF2A
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_NOL10_N
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_WDR41
Beta-prop_WDR11_2nd
PAC11
WD_LRWD1
Beta-prop_SPT8
Beta-prop_ACSF4
WDR54
Motif
Other DBs
NCBI-GeneID:
107270542
NCBI-ProteinID:
XP_015601128
UniProt:
A0AAJ7FNX9
LinkDB
All DBs
Position
Unknown
AA seq
1074 aa
AA seq
DB search
MSGNAQFANPPPSINLPNMSVPPPTATPNLSAPPPNLTTINTSGGYQHRYANHRDGNRGF
FKPFRPYHAPKVVAGGQDSLQDEFDGKRLRKSVMRKTVDYNAAIIKSLENRVWQRDYRDR
RALQPDVIYYPDLLPPPSYVDNPINAVTTRFVKTATNKMRCPIFCMAWTPEGRRLVTGAS
SGEFTLWNGLTFNFETILQAHDSPVRTMVWSHNESWMVTGDHAGYVKYWQSNMNNVKMFQ
AHKEAIRGLSFSPTDHKLATCSDDGTVRIWDFLRCHEERILRGHGADVKCVHWHPQKSLV
ISGSKDNQQPVKLWDPKTGQSLATLHAHKSTVMDVKWNENGNWLVTASRDHLLKLFDLRN
LSQEVQTFRGHKKEASSVAWHPSHEGLFCSGGSDGAILFWHVGADKEVGAIEQAHDSIVW
TLAWHPLGHILCSGSNDHTSKFWTRNRPGDLMRDKYNLNTLPAGSAGIDDHEIADEAAVI
PGMGPEDRISVEGEPEDKNSGIPGLDLDHTADEGKKFANKKVPYSKPIPRNFQAQWNEME
AEDIEQVEALNAFVNQLIETTPGAVPLNEVAPNAIILYGKMIPVEPGSKLAEAIGKGNDA
INKLVFSGEIEELRDVVGPSEDVDEADEFLHDDGDIDYTKVPDIDLPPPLPSSKFAQNPE
LLKTLNRGGKRKFDQLIGWSDGGASDRTSKIHQPVFGGSITEDSQSSDTDLRFNVGNSLK
SNALSGDGFHSSQDEDLRRMAAGDMRGMNRNDEDLRFGGPGRLSGNSDHDMRNSYGDKDF
RQMSHGFGMKKPSSDGDPYGERDGRSRWDDEKNRPDGSRKSDFPGSNFDKRDGMPMGMSS
MGNNTPHMGNNMPHMGNMPNHHNMQNINPNMPPPIPSMVPHPNMTQHPNMQNKNNPNMPP
HPNMQNMDGSMQHMMHHPNMPPSFGPNGPPPGNFGPNFRPPNGNFGPNQHFRPNPMVPFA
PNAGPFNNNFQGPPNFRGPNPGNSSNFDRTGFGSNFRGPNPGNQSQSSGGPNNYNSGFGN
FGGGGSGGGGGKNSHNRGMNRGSNDNMGRNNYNRGRGRDNDQSRGSGSRSRDNY
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggaacgcacagtttgcaaatcctcccccttcaataaatcttcctaatatgtct
gtccctcctccaactgcgactccaaatttatcagccccaccgccaaaccttactacaatt
aatacctctggagggtaccaacatcggtatgctaatcacagggatgggaatcgtgggttt
tttaaaccatttagaccatatcatgctccaaaagttgtggctggtggtcaagattcatta
caagatgaatttgatggcaagaggctgaggaaatctgtaatgcgcaaaactgttgattac
aatgcagctattattaaaagcttggagaatcgagtatggcagcgtgactacagagaccgg
cgtgctctccaacctgatgtaatatattaccctgacctgcttccaccaccaagttatgtt
gataatccaataaatgcagtgacaaccagatttgtgaaaacggccacaaataagatgcgg
tgcccaattttctgcatggcctggacacccgagggtaggcgtctcgttactggagcatct
agcggagagtttacactctggaatgggcttacctttaatttcgagacgattctacaggct
cacgacagcccggtcaggacgatggtatggtcccataatgaaagctggatggtgacagga
gaccacgcgggctacgtcaagtactggcagagcaacatgaacaacgtcaagatgtttcag
gcgcacaaagaagcgattagaggactcagtttcagcccaacggatcacaagctggccacc
tgcagcgacgatggcaccgtcagaatctgggacttcctacgatgccacgaggaacgaatt
ctcaggggtcatggtgcggatgtgaagtgcgtccattggcatccgcagaagagtctagtc
atctctgggagcaaagacaatcagcagccggtgaaactttgggatcctaaaactggtcag
tcgttggcgacgttgcacgctcacaagtctacggtaatggatgtcaaatggaacgagaat
ggtaactggctcgtgacagcttcgcgcgaccacttgctcaaattgttcgacctcaggaat
ctgagccaggaggtacaaacgtttcgtggacataagaaggaagcttccagtgttgcttgg
catccgagtcatgagggtctcttctgtagtggtggtagcgacggggccattcttttttgg
cacgttggcgcggataaggaggttggcgctatagaacaagcgcatgacagtatagtttgg
actcttgcgtggcatccattggggcatatattatgttctggaagcaatgatcatacatca
aagttttggacaagaaatcggccaggagatttaatgagagacaaatataatctaaatact
cttccagctggttctgctggcattgatgaccatgagatcgctgacgaagccgcagtcatt
cctggtatgggtcctgaggatagaatcagtgttgaaggcgaaccagaagataaaaatagt
ggaatcccaggcttggatttggatcatacagcagatgaagggaaaaagtttgctaataaa
aaggtcccgtacagtaaaccaatccctagaaacttccaagcgcaatggaacgaaatggaa
gctgaggatattgaacaggttgaagcacttaatgcttttgttaatcaacttatcgaaacc
acaccaggggctgtacctttgaatgaagtcgctccaaatgctataattttatatggaaaa
atgattccggttgaacctggctccaaattggctgaggcaattggaaaaggaaacgatgcg
ataaacaagttagtattttctggagaaatagaggaactacgtgacgtggtaggtccatca
gaagatgtcgacgaggctgatgaatttttacacgacgacggagatattgattatacgaaa
gtaccagacattgatcttcctcctccattgcctagttcgaaatttgcacagaatccggaa
ttactgaagacattgaatcgtggtggaaaacgtaaattcgatcaactcattggatggagc
gatgggggagccagtgatagaacttctaaaatacatcaacctgtattcggtggttctatt
acagaggattcacaatccagcgatacggacttgaggttcaacgtgggaaattctttaaaa
tcgaacgccctgagcggagacggtttccattcctctcaggacgaggatcttagaagaatg
gcggcaggtgacatgagagggatgaatcgaaatgacgaagacttgcgatttggaggtccc
ggaaggctgtcaggaaattcggatcatgatatgagaaatagttatggcgataaggacttc
aggcaaatgtcacacggttttggaatgaaaaaaccatcttcggatggggatccttatgga
gagcgcgatggtagatctcgttgggacgatgagaaaaaccgtcctgatggttcaagaaag
tctgattttcctggcagcaattttgacaagcgtgacggtatgcctatgggcatgtcaagc
atgggtaataacacgccacacatggggaataacatgccgcacatgggcaacatgccaaat
catcataacatgcaaaacatcaatcccaatatgccaccacctataccaagtatggttcct
catccaaacatgacccagcatccaaatatgcagaataaaaacaatccgaacatgcctccg
catcctaatatgcagaacatggacggttccatgcaacatatgatgcatcatcctaacatg
cctccaagtttcgggccaaatggaccacctcctggtaattttggaccaaacttccggcca
cccaacggtaactttggacctaatcaacacttccggccaaatcctatggtaccatttgcc
cctaatgcagggccctttaataataatttccaagggccgcctaatttccgtggcccaaac
cctggaaattcgtcaaatttcgacaggacaggattcggatcgaacttcagaggacccaat
cccgggaatcaatcccaatcgtctggtggacccaacaactataactctggttttggaaac
ttcggcggcggcggtagtggaggtggcggtggtaaaaatagccacaacagaggaatgaat
cgtgggtctaatgataacatgggaagaaataattacaatagaggtagaggtcgcgataac
gatcaatcccgcggaagtggttctagaagcagagacaattattga
DBGET
integrated database retrieval system
