Cephus cinctus (wheat stem sawfly): 107270920
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Entry
107270920 CDS
T07523
Name
(RefSeq) ATP-dependent RNA helicase DHX36 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccin
Cephus cinctus (wheat stem sawfly)
Pathway
ccin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107270920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccin03019
]
107270920
03012 Translation factors [BR:
ccin03012
]
107270920
Enzymes [BR:
ccin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107270920
Messenger RNA biogenesis [BR:
ccin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107270920
Translation factors [BR:
ccin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107270920
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
AAA_22
nSTAND3
AAA_19
ResIII
AAA_14
NPHP3_N
ATPase
NB-ARC
AAA_23
ABC_tran
NACHT
RsgA_GTPase
ATPase_2
Sigma54_activat
PhoH
Motif
Other DBs
NCBI-GeneID:
107270920
NCBI-ProteinID:
XP_015601853
UniProt:
A0AAJ7C4R8
LinkDB
All DBs
Position
Unknown
AA seq
1012 aa
AA seq
DB search
MTLSQKSLISIFKNMSHPYGRGSYPRSGRSGYSNYEQHRDRDGYGGNTGEHSGYEEFQGR
GRGKGRGHPPGLKGREIGLYYRDKAKKQNSHRDSHRDYLDINLNANTEEDIRLMLRRIER
SKQNEDSNYTNEKNGDLKDKYTHINDSHFKRKFLEIVSGNIQQNLAKSMLLESKLERNNS
LNQEYLEEFKIKQRSAEYKTMLKFREKLPSFQKRQEILDLVRDNQVIVISGETGCGKTTQ
IAQFILDDEIEKGNASITKIICTQPRRISAISVAERVAAERAENLGNSVGFQIRLEKVPA
RDSGSILFCTTGLMLQFMQSDPALRNYSHIILDEIHERNTDSDFIITLLKQIIPKRPDLK
IILMSATLNSDQFSKYYNNCPNIHIPGFTYPVQEFFLEDVLQITRFEFPEIGPALTGYRK
YIKKHKKERQKFDDFCDFIEPYVRHLESEKKYSDFVLKQLRNPRSEELSLDLVEILTKHI
CTSKPPGAILIFLPGIMDISKLHKIMVTSGKYPPGNYIIYPLHSRMPTVDQKIIFQKPPS
GVRKIIIATSIAETSITIEDVVYVIDCGKMKLTNFDLENNILTLEPEWVSLANAKQRKGR
AGRVQSGTCYHLYSKARELTFDQYPLPEMLRTRLEEVILQAKILQLGKIQSFLAGVIDPP
DPKAVELSLDLLRKLEALDSDENLTPLGYHLAQLPLDPRTGKMIIWGALFSCVTPVFAIA
ASLTFKDAFYCPLGKEDEAREKKLKLGLDQYSDHVALAEALRRFEQGQKWRGSNSYCREY
FLSGNTLKLLSDMKRQFALHLSEMKFLDSGDPNDQRSNRNSNNLALVKAIVCAGLYPNIA
RTKSSGHHHHHHKTARNHSVKIWTPEDGPVKLHPSSINDKGGPFPSPYMTYFTKQRSTAI
FLHDTTCISPIALLLSAPINSINEEKGYCVITVSNFLKFKCQPGSADIIQKLRKKLDFLL
EYKIAHPGTVRWDHSEGAVLSAIIELITEADEEMGLKCRGKYGLNFSNDNSD
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgacattgtctcaaaaatcattaatatcaatatttaagaatatgtcgcatccttatggg
cggggttcgtatccacgaagtggtcgttcaggttattccaattatgaacaacatagagat
agagatggttatggaggaaatactggagaacactctggatatgaggaatttcaaggtaga
ggtagaggaaaagggagaggtcatccaccaggacttaaaggaagagagataggactttac
tatagagacaaagcaaagaaacaaaattcacatcgtgattcgcacagagactatttagat
ataaatttaaatgccaacactgaggaagacattagattaatgttgcgaagaattgaaagg
tccaagcaaaatgaggattcaaattacactaatgaaaaaaatggtgaccttaaagacaag
tatactcacataaatgattctcattttaagagaaagtttctggaaattgtttctggtaat
atacaacagaatttagctaagtccatgttattggaatctaaactggaacgaaataactct
ttaaatcaagaatatttagaagagttcaaaataaaacagagatcagcagaatataaaact
atgcttaaatttcgagagaagttaccctctttccaaaaaagacaggaaattcttgacctt
gtgcgtgataatcaagtgattgttattagtggagagacaggctgcggaaaaacaacacag
attgcccaattcatattagatgatgaaattgaaaagggcaatgcaagcattacaaaaata
atttgtacacaaccaagaagaatttctgcaatttcagtagctgaacgtgttgctgcagaa
agagcagaaaatctaggaaattcagttggttttcaaataagattagaaaaagttccagct
agagactcaggaagcatattattttgtactactggtttaatgttacaatttatgcaaagc
gatccagcattacgaaattactcacatattattttggatgaaattcatgaacgtaatacc
gacagcgattttattattactcttctgaaacaaataattccgaaaagaccggacttgaaa
attattttaatgagtgctactttgaattcagatcaattctctaagtattataataattgt
cccaacatacatataccagggtttacctatccagttcaagaattctttttggaggatgtt
ttgcaaatcaccagatttgaatttcctgaaattgggccagctctgactggctataggaaa
tacataaaaaagcacaaaaaagaacggcaaaaatttgatgatttttgtgattttattgaa
ccatatgttagacatctagaatctgagaaaaagtattcagatttcgttttgaaacaatta
cgtaatccaagaagcgaggaactttcgttagatctagtggagattctcacaaaacacatt
tgtacatcgaaaccaccaggagcaattttgatatttttaccaggaataatggatatatca
aaattgcataaaataatggtgactagtggaaaatatccacctggaaattatattatttat
ccattacattcaagaatgcctactgtagaccaaaaaattatctttcaaaaacccccatcg
ggtgtacgaaaaattattatcgctacatctattgcggaaacatcgattacaattgaagac
gtggtttacgtcattgactgtggaaaaatgaaattaacgaacttcgatctggaaaataat
attcttaccctagagccggaatgggtttctttggctaatgcaaaacaaagaaagggtcga
gctggaagagtacagtctggtacatgctatcatctttactctaaagccagagaactgact
ttcgatcagtaccctttaccagaaatgttacgaactagactggaagaagtaattctccaa
gcaaaaatattgcaattagggaagatacaatcctttctggcaggggtgatagatcctccg
gatcctaaagctgtcgaactctctttggatttactccgaaagttagaagctcttgatagt
gatgaaaacttgacaccattaggttatcacttggcccaattacctttggatccacgaaca
ggcaagatgattatatggggtgccctattttcttgtgttactcccgtgtttgcgattgca
gcaagtttaacattcaaggacgcattttattgtcctttgggaaaggaagatgaggctcga
gagaaaaaactaaaacttggcttagatcagtacagcgatcacgtagctctggccgaagca
ttgcggcgttttgagcagggacaaaagtggcgtggttccaattcttactgcagagaatat
tttctgtcggggaacacgttaaaattgttatccgacatgaagcgtcagtttgcacttcac
ttatcagaaatgaagtttcttgatagcggtgatccgaatgatcaaaggtccaatagaaac
tccaataatttagcgttggtgaaggcaattgtatgcgccggtctttatccaaacatcgct
cgaacgaaatcgagtggtcatcatcatcatcatcataaaactgcaaggaatcattccgtc
aagatttggactccggaagatggaccagtgaaattgcatccatcaagcattaatgataag
ggtggaccatttcctagtccttacatgacttatttcacgaagcaacgttccacggccatt
ttcttgcatgatacaacgtgcatcagtccgatagctttgcttttatcagcaccaattaac
tcaataaacgaggagaaggggtattgtgtcattactgtatcgaactttttaaaatttaaa
tgtcaaccaggatctgctgatattattcagaaattacgtaaaaaactggattttctacta
gagtacaagattgcccatccaggaacggtacggtgggatcattcagaaggagctgtattg
agcgctattatcgagcttattacggaagcggacgaagaaatgggattgaaatgtcgcggt
aaatacggtcttaatttttctaacgacaattctgattaa
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