Cephus cinctus (wheat stem sawfly): 107271676
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Entry
107271676 CDS
T07523
Name
(RefSeq) uncharacterized protein LOC107271676 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ccin
Cephus cinctus (wheat stem sawfly)
Pathway
ccin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107271676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccin03021
]
107271676
03019 Messenger RNA biogenesis [BR:
ccin03019
]
107271676
Transcription machinery [BR:
ccin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107271676
Messenger RNA biogenesis [BR:
ccin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107271676
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
107271676
NCBI-ProteinID:
XP_015603411
UniProt:
A0AAJ7C7P8
LinkDB
All DBs
Position
Unknown
AA seq
1945 aa
AA seq
DB search
MTSAKSKEIADEYISSLSDLTINSKPLINMLTMLAEDNVEHAPAIVQAVETHLQKVRSDI
KLPVLYLIDSIVKNVNGAYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPSK
KLFSLDVRVQSIDPAWPITASPTAISSGSIHVNPRFLSMPQPTTPTIVPPIVPAVKLPPG
DPVSTTEAAMREQLLKKQRELLELQKKKIELELLQAKASLEQQQRQLDKQAGTLKTEAAL
PTVQVPPSLENVLQGKPVAPVVPSQAPKQVPKQFPAATASLLKNAGGSAGGTRIAPASSI
AVASARPVVSRDPRLKSTAPVPELGTGNVDPRLRQGTTGQKDSRIDGQTQPVPNMITVLS
DQLKQQLISKQAVTSTMNKPSSNFASSDTSTTNASSNSNANANLTSSSTNNNTNNNNKSF
SGNANKDAVSHRTSQKKDPRLSSNNSANLNSSSTKSGQGQSSAGGGSSSALSGSGRGAGG
SGDSKSKDSKSSSSSLSSRGSSSSTNEKSSASSKSSHRKLGNKSRSKQPQSSPSKMPKVE
RDFSPARSKSREKDSGDSSPSVRTSPQSSQTSKNRKKNSKSRKRTPSPPYRIPRRNENKS
ISSLSNSVGLTEEEQSGSLIVSPPHPPTFKEIRPNARQRNYVRRNKEGSHSPEPNAPGTV
QLTQTTISEPILDASSKDEDLRATIPLAGAASAINVSEKKEDLDLRVLPAVGANKRQSTE
HLESSVSKKTKAEKFDALFGNEDVDLRTLTHPKAGRPPTPPPPVISGEDGKEGWAKLKTP
SKGDREKQTGGPDDKRERDRNRDRLGRPRLYNKLPDDPKERRRTLSSDDQDPRGAGRRGR
DDKPERNADRNIEIIMKQAAEQLNQGSITKTQYNTLIQEVLQMSEDQKLRAAQRKEKETG
SIVWEKGVNNLDINLTPERATFSPSSDGEGHRGGKDMALSRNQNGPRWQNQPWQQPGPWA
HPPGPAFSGPQGHFNSDYRPMGPWQGPRHYGPLRPEYNQYHGGFNQNMPNPRLGPGMMGS
MGPNGPMMSNMMTNGPIGPMGMSNSPIAPGIGMAGMNGPGSMIMNNGPITSNPMPNIMAN
SNVGSLGSGTTGGRNISPSTMSKYDNEDNENSYGGTLVKNQGQCNRELPLPDPKLLEEIS
NDSMKSINIDTIPREIRYYGQTGVVFMSWDDPREIGFQDGIRRVLIDDKDTITCAFNDPY
KEFMYEGEVHRIRLGAPTRELYIDDRWYECYFGGPAITIELGDKKVNVKLEGPPPQVKIG
TVKRTDLVVGKINLIINARNMVPVFLDAKPQIFEIEGKPHTLEFIDALQTVLLNGRPFKV
EFGGLPKPIVVRDKKHFIRFSVLPRGVRAGCVRIAGMRGEGPIESPPPPPQAVSKSKMDV
VSVAPTLPAVEPDTTSQDGSDLASTPKPDLQLDILSSVLPSAMAPSSGLSYHAEPTESSA
APAPVLSLPLNMNELFQRLVETGIVPNVAEQKKPEEEEKKEPEILPVSFDKPETLKIKQP
AIAATLYSGMQCSSCGARFAPELATRYSHHLDWHFRQNRRERDSARKAHSRPWYYDVSDW
IQFEEIEDLEDRAQSWFETEKQTAESEGAAAEDSPQETVQPSVPTGSDEESRCQVCHDAF
EQFYNEEKEEWHLRPAVNFEGKNYHPLCLEDHKEKNLVRVLEKTALALDETLAELEDEKK
EETQVSTEEAKEGEDEQEEYDPEQPIKDSVLDESMETSCETSAETPVETESTDQSKKTED
DELQDEVERDKDEAETQSANESAELSEPNKEGSETSVQEEKEKTEETEIESFENIKIKEE
PIDADDFPQGQDEEQLEFANLEIKEEPLDPEPEPDESVVSEPAMVDTTHAAMKSSIDGNV
ELESAPTSIPAAPSRIKINITKPLNTSSNKESEEPKEKPQTETPHEENPEPLHPASIKPS
LQGRKLSTLPPVDKGHELSGLCSIM
NT seq
5838 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcggcgaagtccaaggagatagctgacgagtatatctcgtcgctgtctgacttg
acgatcaacagcaagccgctcattaacatgctcacaatgttagcagaggacaacgtcgaa
catgctcctgcgattgtccaagccgtcgagacccacctgcaaaaggtgagaagcgacatc
aagctaccggttctttacctcatcgactcgattgtcaagaacgttaacggagcctatcta
aacctcttcacgcaaaatattgtcaataccttttgcggtgttttcgagaaggtggacgag
aacacgagggccagtatgtggaaattgcgacagacttggaacgacgttttcccgtcgaag
aagctgttctctttggacgtgcgagtgcaaagtatcgaccctgcttggccaatcacggct
tctcctactgccatatcttctgggtccatacacgtaaatccgagatttctgtcaatgccg
caaccaactactccgacgatcgtaccgccgattgtaccagccgtgaagctacctcctggc
gatcctgtgtcgacgacggaggctgcaatgagggagcaactgctgaagaagcagcgggag
ttgttggagttgcaaaagaagaagatcgagctggaattgcttcaagcgaaagccagcttg
gaacagcagcaaagacaactggacaagcaagctgggactttgaaaacggaagcggcttta
ccaacagtgcaggttccgccatcattggagaatgtacttcagggaaaacctgttgctcct
gttgtgcctagtcaagcgccaaaacaggtccctaaacagtttccggctgcaaccgcatcg
ctgctaaaaaacgccgggggaagtgcgggcggtacgcgaattgctccggcaagtagcata
gccgtagcatcggctagaccagtagtatcgcgcgatccgcgactgaagtcaacggctcca
gttccggagctgggaacgggaaacgtggatcctcgactccgacagggaacgactggccaa
aaggattccagaatcgacggccagacgcaaccagtccctaacatgatcactgtactttca
gaccaattaaagcagcagttaatatcgaaacaggctgtgactagcactatgaacaagcct
tcgtcaaatttcgccagctcagatacctcgacgacaaatgctagtagtaatagtaatgct
aatgcgaatcttactagctcgagcacgaacaacaacaccaacaacaataataaaagtttc
agtggtaacgcaaataaagatgctgtctcgcatcgcacgagccaaaagaaagacccccga
ttgtctagtaataatagcgctaatctaaacagcagtagtacaaagagcggtcagggtcag
tcgtccgcgggcggcggtagctcttcggctttgtccgggagcggtagaggagctggagga
agcggtgactccaagtcgaaagattcaaagagctcaagctcgagcttgtcctcgagaggc
tcttcgtcctcgaccaatgagaaatcctccgcttcctcgaagtcctcccataggaaacta
ggaaacaaatcgcggtctaagcaaccgcaatcatcgccgagcaagatgccgaaggtcgag
cgcgacttcagtcctgctaggtcgaaatcccgcgagaaggacagcggcgatagttcaccg
tccgtgcgtacctctcctcaatcctctcaaacatccaagaaccgaaagaagaattcaaaa
tcgagaaagcgcaccccaagtccaccttatagaatccctcggcgcaacgagaacaaatcc
atctcctctttgagtaattccgttggtcttaccgaggaggagcaatcaggttccttgata
gtatctcctcctcatccacccaccttcaaagagattagacccaacgctcgacaaagaaac
tacgtgagacgcaataaagaaggcagccacagtccggagccaaatgcgcccggtacagtg
cagctgacccagactactatttctgaacccatcctggatgcctccagcaaggacgaggat
ctcagggcgactataccattggccggtgctgccagtgcaatcaacgtctcagaaaagaag
gaagatttggatcttcgcgtgttgccagccgttggtgccaacaagagacagagcaccgag
catctggaatcttctgtatctaagaaaacaaaggcagagaagttcgatgctttgtttgga
aatgaggacgtcgacttgcgaaccctgacacatcctaaagctggtagacctccgacacca
cctccacccgtcatatctggcgaggatggaaaagaagggtgggcgaagctgaaaacacca
tcgaagggtgatcgagaaaaacaaacaggtggtccagatgataagcgtgaacgagatcgt
aacagagatcgccttggaaggcctcgattatataataaattacctgacgatcctaaggag
aggcgaagaactctttcgagcgacgatcaagatccaagaggtgctggtcgtcgcggtaga
gatgataaaccagagagaaatgcggataggaatattgaaattattatgaaacaggctgcc
gagcagttgaatcagggttctatcactaagacacaatataatacactgattcaggaggtt
ctgcagatgagcgaagatcagaaattgagggcagctcagcgaaaggaaaaggaaaccggg
tcgatagtttgggaaaagggtgtgaacaatcttgatattaatttgactcctgaaagagca
acgttcagtccgtcgagcgatggagaaggtcaccgaggtggcaaagatatggcgttatcc
aggaatcagaacggtcccagatggcagaatcagccatggcagcaaccgggaccgtgggcg
catccgccaggtccagcattttctggacctcagggacattttaattcagactatcgacca
atgggtccttggcaaggaccaaggcactatggacctctcagaccagaatataaccagtat
catggcggtttcaatcaaaacatgccaaatccacgattgggtccaggaatgatgggttct
atgggacccaatggaccgatgatgtcaaatatgatgacgaatggacctattgggccaatg
ggcatgtctaattctccaattgcacctggaatcggaatggcgggaatgaatggaccaggt
tcaatgatcatgaacaatggaccaatcacgagcaatccaatgccaaatattatggccaac
tctaacgtaggatctcttggttctggaactacaggaggtagaaatatatcgccaagcacg
atgtctaaatatgataacgaagataatgaaaacagttatggcggaacgctagtcaagaat
caaggacaatgtaatcgtgaattacctctaccggatcctaaactattggaagagatttct
aatgactccatgaaatcaataaacatcgatactattccaagagagataagatactatggg
caaactggtgttgtctttatgagttgggacgatccaagagaaattggtttccaggatggc
ataaggagggttctcatcgacgacaaagataccatcacctgcgcatttaatgatccttac
aaggaattcatgtacgagggtgaagttcacagaattcgactaggcgcaccgacgagggaa
ttatacattgatgatcgctggtatgaatgctactttggtggaccagcaattacaatagaa
ttgggagacaagaaagtcaatgtaaagctagagggtccaccacctcaagtcaagatagga
acagtcaagagaactgatcttgtagtcggcaagataaatctaattatcaatgccaggaat
atggttcctgtgttccttgacgctaaaccacaaatatttgaaattgaaggaaagccacat
acactcgaattcatagacgcgttgcaaactgtacttttgaatgggcgaccgttcaaagta
gaatttggaggactgcccaaacccatcgttgtcagggataagaagcatttcataaggttt
tctgtattgccaagaggcgtgcgtgctggatgcgtaagaatagctggaatgagaggggaa
ggtccaattgaatcgccaccaccacctcctcaggcagttagcaaatctaaaatggatgtt
gtgtcagttgcaccgacgctaccagctgtggaacctgatacgacgtcacaagatggatct
gatcttgcttcgactccaaaaccagatttacaactggatattttgtcgtcagtgctgcca
tctgcaatggcaccttcttctggactttcatatcatgcagaacccacggaaagttctgcg
gcaccggcacctgtattatccttaccattgaatatgaacgagctattccaaaggctcgtt
gagaccggtatagttcctaatgtagccgaacaaaagaaaccggaagaagaagaaaagaag
gaaccggaaatactaccggtgtctttcgacaagccagaaactcttaaaattaagcagccg
gctattgcagcaacactgtacagtgggatgcaatgtagctcttgcggtgcaaggttcgca
cctgaacttgcaactagatacagtcaccatcttgactggcattttagacaaaacagacgt
gaaagagattctgccaggaaggctcattcacgaccctggtattatgatgtcagtgactgg
attcagtttgaagaaattgaagatctcgaagatagagcacaaagttggttcgagactgaa
aagcagactgcggagagcgaaggtgctgccgccgaggactctcctcaggaaactgtgcaa
cctagtgttcctacgggatctgatgaggagtcgaggtgtcaggtctgccacgatgctttc
gaacagttctacaacgaagaaaaggaggaatggcatttgaggccagcagtcaacttcgaa
ggcaagaattaccatcccctgtgtctggaggatcataaggaaaagaatcttgtgcgagtc
ctggagaagacggcgttggcgcttgacgagactctggcggagcttgaggacgagaagaaa
gaggaaacgcaagttagtacagaggaagctaaggaaggggaagacgagcaggaggaatat
gatcccgagcagccgataaaggattccgtattagacgagtcgatggaaacgtcatgcgaa
acgagtgcggagactcctgtggaaacagagagtaccgatcagtccaaaaagacagaggat
gatgaactgcaagatgaagttgaaagagataaagacgaagcagaaacgcagtcggcgaat
gaaagtgcagagctgtcagaacctaacaaagagggatcggaaacgtcggttcaagaggaa
aaagaaaaaacggaggagacggagatcgagtcttttgagaatattaaaattaaagaagaa
cccatcgacgcggatgactttccccaaggtcaggatgaggagcagctggagtttgccaac
ttagaaataaaggaagaacccctcgatccggagcccgagccggatgagagcgtagtcagt
gaaccagcaatggttgacacgacccatgctgccatgaagagttcaatcgatggtaacgtc
gaattggaatcagcaccaacgtccattcctgcggcgccatcccggataaagatcaacata
acgaaacccttgaacacaagcagtaacaaggaaagcgaagaaccaaaggagaagccacaa
acagagaccccccacgaggagaatcctgaaccgttgcatccagcatcgataaaacccagt
ttgcagggaagaaaattgtcgaccttgcccccagtggataaaggacacgagctgtccgga
ctctgctccatcatgtaa
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integrated database retrieval system
