Cephus cinctus (wheat stem sawfly): 107272241
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Entry
107272241 CDS
T07523
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ccin
Cephus cinctus (wheat stem sawfly)
Pathway
ccin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107272241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccin03041
]
107272241
03009 Ribosome biogenesis [BR:
ccin03009
]
107272241
Enzymes [BR:
ccin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107272241
Spliceosome [BR:
ccin03041
]
Complex A
U2 snRNP components
U2 related factors
107272241
Complex B
107272241
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
107272241
Ribosome biogenesis [BR:
ccin03009
]
Eukaryotic type
90S particles
Helicases
107272241
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
SRP54
Flavi_DEAD
ATPase
T2SSE
AAA_7
ABC_tran
TsaE
Motif
Other DBs
NCBI-GeneID:
107272241
NCBI-ProteinID:
XP_015604694
LinkDB
All DBs
Position
Unknown
AA seq
717 aa
AA seq
DB search
MSKRRIEVVDPYIKRRPVGSTSNSMAVVPPTPKNQVQLNPYTGLPYTPRYHEFYKKRITL
PVFEYRADFMRLLAQHQCIVLVGETGSGKTTQIPQWCVEHSLSMGTKGVACTQPRRVAAM
SVAQRVSEEMDVALGQEVGYSIRFEDCSSSKTVLKYMTDGMLLREGMSDPMLDTYQVILL
DEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPV
EIFYTPEPERDYLEAAIRTVIQIHMCEEVAGDLLLFLTGQEEIEEACKRIKREMDNLGPD
VGELKCIPLYSTLPPNLQQRIFEPAPPNKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDP
GFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQENTY
PEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDLG
AVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAKKAADDAKMKFAH
IDGDHLTLLNVYHAFKQNVEDPQWCYDNFVNYRSLKSGDNVRQQLSRIMDRFSLKRTSTE
FTSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSSCLDHKPEWVIYNEF
VLTTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEVIQGRLDSKQYQEGF
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcgtagaattgaagtcgtggacccatatatcaagagaagaccagttgggtca
acatctaatagtatggctgtcgttcctccaacaccaaaaaatcaagttcaacttaatcct
tatacgggtctaccatacacacctaggtatcatgaattctataagaaaagaatcacgtta
cctgtgtttgagtatcgtgcagactttatgcggcttcttgcccagcatcaatgtatagta
cttgtgggagaaactggttctggtaaaacaacccaaattccacaatggtgcgtggaacat
tctttatctatgggaacaaaaggtgttgcttgtacacaaccaagaagggttgcagctatg
tctgtggctcagcgagtttcagaagagatggacgttgctcttggtcaagaagtaggatac
agtattcgtttcgaagattgtagttcatcaaaaactgtattaaaatatatgaccgatggt
atgcttcttcgagaaggaatgtcagatcccatgctggatacataccaagtaatattactt
gacgaagctcatgaaaggacattagctaccgatctattgatgggtgttcttaaagaagtt
atcaaacaaagaccagacttaaaactcgttattatgagtgcaacccttgatgctggcaag
ttccagcaatactttgacaatgctccccttatgaatgtaccgggcagaacccatcctgtt
gaaatattctacacaccggagccagaacgcgattaccttgaagctgccattagaactgtc
attcagattcacatgtgcgaagaagttgctggggatttactcttgtttctcactggtcag
gaagaaattgaagaagcttgcaagagaatcaaaagagagatggacaatcttggcccagat
gttggtgaattaaagtgtataccattatattcaacacttccaccgaatctacagcaaaga
atttttgaacccgctccgccaaacaaaccaaatggcgccattggtaggaaagtcgtagta
tctactaacattgctgaaacgtctttgactattgatggagtagtgttcgtcatagatccc
ggttttgccaagcaaaaggtttacaatcctagaattcgcgtagaatctctactcgtttct
ccaatcagtaaagcatccgcccagcaaagagcaggtcgtgcaggacgtacgcggcccgga
aaatgttttcgattatacacagaaaaagcgtacaagaacgagatgcaggagaatacctat
ccagaaattctacgatccaatcttggaagtgtagtgttgcagttgaagaaacttggaatt
gatgacttggttcactttgacttcatggaccctccagctccggaaactctaatgcgagcg
ctagaactactcaactacttagcagcacttgatgacgatggaaacttgaccgacttgggt
gccgtaatggcggaattcccactggatccacaattggcaaagatgctcatcgcttcgtgt
aatcacaattgcagcaacgaaatactcagcattactgcaatgctctcagtcccacagtgt
tttgtgagacctaacgaggccaaaaaggctgcggacgatgccaaaatgaaattcgcacat
atcgacggtgatcacctgacactattgaacgtttaccacgcattcaaacagaatgttgag
gacccacaatggtgttatgacaattttgtgaactaccggtcattgaagagtggtgataac
gtcagacaacaattgagcagaattatggacagatttagcttaaaacgtacttcaacagaa
tttacatcaaaggattattacatcaatatcagaaaagcacttgtcaatggtttctttatg
caggttgctcatctagagaggacaggacattatcttacaattaaagacaaccaaattgta
caacttcatccaagtagttgtttggatcacaaaccagagtgggtcatttataatgaattt
gtcctgacgaccaagaattacattagaactgtcacagatataaaacctgattggttattg
aagatagcaccacaatactatgatctgcagaattttccacagtgtgaagctaaaagacag
ctagaagtgattcaagggcgattagattccaaacaataccaggaaggtttctaa
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