Cephus cinctus (wheat stem sawfly): 107273315
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Entry
107273315 CDS
T07523
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ccin
Cephus cinctus (wheat stem sawfly)
Pathway
ccin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107273315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccin03041
]
107273315
Enzymes [BR:
ccin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107273315
Spliceosome [BR:
ccin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107273315
Complex C
U4/U6.U5 tri-SnRNP related factors
107273315
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
Flavi_DEAD
SLFN-g3_helicase
T2SSE
Cas3-like_C_2
TsaE
ATPase
Motif
Other DBs
NCBI-GeneID:
107273315
NCBI-ProteinID:
XP_015606876
UniProt:
A0AAJ7CBR7
LinkDB
All DBs
Position
Unknown
AA seq
886 aa
AA seq
DB search
MSKYRRKESSTEDSDSEEERRKKDIKERDEFASRLKAKDDSKVRKVAMPAGSGAAEAAKR
LKVMETDSREKLVPKLRVESRRKYLEKRKEDKVAELEADILDDEYLFEDEVLTEREKRER
EHKKQLLKLAKEHERARELERVQRYHMPHEKGKDAIEAETVDIEPPQSEQSKWESDQMSS
AVFRFGAKDRKAQQDYELLLEDEVEFVQALRMPGSTKDKKRELSPPPQTKALTTIEETKK
SLPIYPFRKDLVQAIKDHQVLIIEGETGSGKTTQIPQYLYESGFTEDGKIIGCTQPRRVA
AMSVAARVAHEMAVKLGNEVGYAIRFEDCTSQRTRIKYMTDGTLHREFLSEPDLASYSVM
IIDEAHERTLHTDILFGLVKDITRFRTDLKLLISSATLDATKFSQFFDDAPIFRIPGRRF
PVDIYYTKAPEADYIDACVVSILQIHATQPFGDILVFLTGQDEIETCQEMLQERVRRLGT
KLAELLILPVYANLPSDMQAKIFQPTPPGARKVVLATNIAETSLTIDNIVYVIDPGFAKQ
NNFNSRTGMESLMVVPISKASANQRAGRAGRVAPGKCFRLYTAWAYQHELEDNTVPEIQR
INLGNAVLTLKALGINDLVHFDFLDPPPHETLVLALEQLYALGALNHRGELTKLGRRMAE
FPLDPMMAKMLLASERYRCSEEVATIAAMLSVNGAIFYRPKDKIIHADTARKNFHVPGGD
HLTLLNVYNQWQQSDFSTHWCYENFIQHRSMKRARDVREQLVGLMQRVEMELVSGISETI
NIRKAITAGYFYHVARLSKGGHYKTAKHNQTVSIHPNSSLFQELPRWLLYHELVFTTKEF
MRQVTEIESKWLLEVAPHYYKPKELEDSTNKKMPKVTGRARPDGTN
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatacagaagaaaggagtcttcaaccgaagacagtgacagtgaggaagaaagg
cgtaaaaaagatattaaggaaagagatgaatttgctagtcgtcttaaagctaaagatgat
tccaaagtacgcaaggttgcgatgcctgcaggttctggagctgctgaagcagcaaaaaga
ctcaaagttatggaaactgattcaagggaaaaacttgtgccgaaactgcgtgtggaatca
cgtagaaaatatttggagaaaagaaaagaagacaaggttgcggagttggaggctgatatt
ttggatgatgaatacctttttgaagatgaagttttgactgaacgagaaaaaagagaaaga
gagcataaaaaacaattactaaaattagcaaaggagcatgaaagagccagagagttggaa
cgtgtgcaacgttatcatatgcctcatgaaaagggaaaggatgctattgaagcagaaact
gttgatatagaaccaccacaatccgagcaaagtaaatgggaatcagatcaaatgtcctct
gcagtattccgctttggcgccaaagatagaaaagcacaacaagattatgaacttcttctc
gaggatgaagttgagtttgtccaagcgttgcgtatgcctggtagtaccaaggataaaaaa
cgtgagttgtcaccaccacctcaaacaaaagcattgacaacaatcgaggaaacaaaaaaa
agtttacctatatatccattcagaaaggatctcgttcaagctattaaagatcaccaggta
ttaattattgaaggagaaacaggatcaggaaaaactacacaaatccctcaatacttatac
gaatccggcttcacggaggatgggaaaataattggatgtacacaaccgagaagagtagct
gccatgtctgtagctgcacgagtagctcatgaaatggcagtgaaacttggtaatgaagtt
ggttatgcaattcgttttgaggattgtacatctcagcgtactcgtataaaatatatgaca
gatggaactctgcatcgtgaatttcttagtgagcccgatttagcatcgtacagtgtcatg
atcatagacgaggctcatgaacgtactttacatacagatattctgtttggattagtaaag
gatattacacgctttcgtacagatctaaagcttttaatttcttcagctaccttggacgct
acgaagttcagtcaattctttgacgatgctccaattttccgcattccaggacgacgattc
cctgttgatatttattacacaaaagctccggaagctgattatattgatgcctgcgttgta
tccattcttcagatacacgcgactcaaccgtttggtgacatattagtattccttacaggt
caggacgagatagagacgtgccaggaaatgctgcaggagagagtgagacgattaggaacg
aaattagctgagcttctaattctaccggtttatgcgaatctacctagtgacatgcaggcg
aaaatatttcagccgactccaccaggtgccaggaaggtggtacttgctacgaatatagct
gagacgtctttaaccatagacaatattgtatacgtgattgatcctggttttgcaaagcag
aataattttaattcacgaaccggtatggaaagtttaatggtggtgccgattagtaaagct
tctgcgaatcaacgtgctggaagagctggtagagtcgcgccaggaaaatgttttaggctt
tacacagcatgggcttatcaacatgaactagaggacaacacagttcctgaaattcaacga
attaatcttggtaatgctgtactgactttaaaagcactaggcattaatgacttggttcat
tttgatttcttggatcctccacctcacgagactctcgtattggcattggagcaactttat
gcacttggtgctctaaatcatcgtggtgaattgaccaaacttggtcgtagaatggcggaa
tttccactggatccaatgatggccaagatgttacttgctagcgagcgttatcgatgttct
gaggaagtagctactatagcagcaatgctttctgtaaatggagcaatattctacaggcct
aaagataaaatcattcacgctgataccgctcgtaagaacttccatgttcctggcggagat
catttgaccctgttaaatgtatacaatcaatggcagcaaagtgatttcagtacacattgg
tgttacgaaaattttatccagcatagatccatgaaaagagcaagagacgttcgagaacaa
ttggtaggacttatgcaacgcgtagaaatggagcttgtctctggaattagcgagactatc
aatatccgaaaggcgataacggcaggctatttttatcacgtagcacggttatctaaagga
ggtcactataaaactgctaaacacaatcagactgtttctattcatccaaacagttcacta
tttcaagagctgccaagatggctactgtatcacgaactggtatttacgacaaaggaattt
atgcgacaggtcacggaaatagaaagtaaatggctattggaggtagcaccacattattac
aaacctaaagaacttgaggattcgacaaataagaaaatgccaaaggtcacaggacgtgca
cgtccagatggtacaaactaa
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