Corynebacterium crudilactis: ccrud_13560
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Entry
ccrud_13560 CDS
T04829
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccjz
Corynebacterium crudilactis
Brite
KEGG Orthology (KO) [BR:
ccjz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccjz03016
]
ccrud_13560
Enzymes [BR:
ccjz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ccrud_13560
Transfer RNA biogenesis [BR:
ccjz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ccrud_13560
Prokaryotic type
tRNA splicing ligases
ccrud_13560
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ANE05124
UniProt:
A0A172QWN7
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All DBs
Position
2952083..2953234
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AA seq
383 aa
AA seq
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MNHVINFASHLEDAALKQAEATATMPFIYPHVALMPDAHYGLGSSVGTVFGTKGAIIPAA
VGVDIGCGMIGVCTNYTASDLQGRDLVILRDYIERVIPLSPGNYNSTTLKDTVKPKIAEL
EELATRDGVDLSHSPTWKRQLGSLGGGNHFIELCLDELDRVWMFLHSGSRGVGNKIAQKH
IKVARAACTEVELPDQDLAYLSEGTKEFDSYIKELNWAQRFAFLNREEMMDRFARELGFF
VDKPLEEVERINCHHNYTVPEEHYGETVWLTRKGAVLADDGTPALIPGSMGTASYVVSGK
GNTEALRSAPHGAGRRMSRNQAKKRFSTADLDSRMAGIVYRPGKEWIDEIPDAYKDIDQV
MEDAKNLVKIRHKLRQIVNVKGT
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatgtcattaacttcgcttcccatctagaagacgctgctctcaaacaagctgaa
gcaactgccaccatgccgtttatctatccacatgtggcactcatgcctgatgcacactac
gggttgggttcctcggtgggcacggtattcggaaccaagggtgcgatcatcccggcggcc
gtaggcgtggatataggttgcggaatgataggcgtgtgtaccaactacacagcttctgat
ctgcaggggcgtgatttggtgatactgcgggattacatagaacgtgtcattccgctgtct
ccgggaaactacaattccaccacgctgaaggacaccgtcaaaccaaagatcgcagaattg
gaggaattggcaacccgcgatggcgttgatctgtcacattcaccaacgtggaaacgccag
ttgggttcccttggcggcggcaatcacttcattgagctgtgtcttgatgagttggatcgc
gtgtggatgttcctgcactcaggttcccgcggtgtgggcaacaagattgcacagaaacac
atcaaagttgccagagctgcctgcacagaagtggaacttcccgatcaggatcttgcctac
ttgagcgagggcactaaagaatttgattcctacatcaaggaactgaactgggcgcagcgt
tttgcgttcctcaacagggaagagatgatggacagatttgctcgggaactggggtttttc
gtcgacaagccgttggaagaggtggagcgcatcaactgtcaccataactacacggttccg
gaggagcactacggcgaaaccgtgtggctcacccgcaagggtgccgtgttggcggacgat
ggcacgccggcgttgattccggggtcgatgggcaccgcgtcttatgtggttagtggcaaa
ggcaacaccgaggctttgcgctctgcaccgcatggcgcgggccgacggatgtcacgcaac
caggctaaaaaacgcttctcgacggccgacctggactcccggatggcgggcattgtctac
cggccgggcaaggagtggatcgatgagatcccagatgcctacaaagacatcgaccaggtg
atggaagatgcgaaaaatttggtgaaaatccggcataagctgcgccagatcgtcaacgta
aaaggcacctaa
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