Clostridium carboxidivorans: Ccar_05055
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Entry
Ccar_05055 CDS
T03979
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cck
Clostridium carboxidivorans
Pathway
cck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ccar_05055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cck03019
]
Ccar_05055
Messenger RNA biogenesis [BR:
cck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ccar_05055
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
CFAP54_N
Motif
Other DBs
NCBI-ProteinID:
AKN34121
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Position
1174656..1176320
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AA seq
554 aa
AA seq
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MKNKSKVKVIPLGGLGEIGKNMTAIEYDNEIIVIDCGLGFPDMEMYGVDLVIPDITYLLN
NRDKVKGVMLTHGHEDHIGALPYVLKQLNVPVYGTRLTLGLVESKLEEHEMLSNCTLLEV
KTGEEVKTENFRIEFIRSCHSIADACALAIHTPEGVIVHTGDFKVDYMPIDGDVIDLHQF
AKLGSRGVLLLMADSTNVERPGYTVSERIIGDNLTGIFSKAKGRVIVATFASNTNRIQQI
INSSLFYGRKVAFSGRSMEKISSMAMELGYMKLSEDQLISVDDINKYPSDKITIITTGSQ
GEPMAALSRIAYSNHRKITIEKGDVVIISASPIPGNEKLISKLIDELFRKGAEVIYNALE
EVHVSGHACQEELKLMHTLIKPKFFMPVHGEYRHLKQHELLAENLGMDSKNIFVLENGQV
LELNRNSAARSAKVTCGTVMIDGLGIGDVGNIVLRDRKHLSQDGVVTIVVTIDKASFSIL
SGPDIITRGFVYMKESGDLINEARGVVKAELDKCMESKIKDWFTIKSNIKYSLGGFLYNK
TRRRPIILPIIMET
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaataaaagtaaagtaaaggtaattccattaggaggtctaggtgaaattggcaaa
aatatgacagctatagaatatgataatgagataattgtaattgattgtggcttaggtttt
cccgatatggagatgtatggtgttgatttagtcataccagatataacttatttgctaaat
aatagagacaaagtaaaaggggttatgttgactcatggacatgaagatcatataggtgct
cttccctatgttttaaaacaactaaatgtaccggtatatggaacaaggttgactttagga
cttgtggaaagtaaattagaagaacatgaaatgctttctaactgtactcttcttgaagtt
aaaacaggagaagaggttaaaactgaaaatttcagaatagaatttatacgaagctgtcat
agtattgcagatgcctgtgcactagctatacacactccagaaggtgttatagttcataca
ggagattttaaagtagattatatgcctatagatggggatgtaatagatcttcatcagttt
gcaaaactaggaagcaggggagtactattattaatggcagatagtacaaatgttgagcgt
ccaggttatacagtttcggagaggattataggagataatttaacaggaatttttagcaag
gcaaaggggagagtaattgttgctacctttgcatcaaatactaatagaattcaacagatt
attaattcatctttgttttatggaagaaaagttgcatttagtggaagaagcatggagaaa
atttcaagtatggctatggaattaggttatatgaaattatctgaagatcaacttataagt
gtggacgatattaataaatatccttctgataaaataactattataaccactggaagtcaa
ggagaaccaatggctgcactttcaagaattgcatattcaaaccatagaaaaattactatt
gaaaaaggtgatgttgtaattatttctgcttcaccaattcctggaaatgaaaaacttata
tctaaactcatagatgaactttttaggaagggagcagaagtaatttataatgctttagaa
gaagttcatgtttcaggtcatgcttgtcaagaagagttaaaattgatgcatactttgatt
aaacctaaattttttatgcctgtgcatggggaatatagacatttgaagcagcatgaatta
ctagctgaaaatcttggtatggattcgaaaaacatctttgtattagaaaatggtcaggtg
ctggagttaaatagaaatagtgctgcaaggtcagcaaaagttacttgtggaacagttatg
atagatggacttggtattggtgatgtagggaatatagtacttcgagatagaaagcattta
tcacaggatggagtagtaacaatagtagtaacaatagataaagcatcctttagtatactt
tccggaccagatattattacaagaggatttgtttatatgaaagaatctggagatttaata
aatgaagcaagaggagtagtaaaagcagagctggataaatgtatggaaagtaaaattaaa
gattggtttactataaaatccaacataaaatattccttaggaggatttttgtataataaa
acaagaagaagacctattattttaccaataatcatggaaacttag
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