Clostridium carboxidivorans: Ccar_07145
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Entry
Ccar_07145 CDS
T03979
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cck
Clostridium carboxidivorans
Pathway
cck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ccar_07145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cck03019
]
Ccar_07145
03009 Ribosome biogenesis [BR:
cck03009
]
Ccar_07145
Enzymes [BR:
cck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ccar_07145
Messenger RNA biogenesis [BR:
cck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ccar_07145
Ribosome biogenesis [BR:
cck03009
]
Prokaryotic type
rRNA helicases
Ccar_07145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
UvrD-helicase
CMS1
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKN30615
UniProt:
C6PSI8
LinkDB
All DBs
Position
1655473..1656915
Genome browser
AA seq
480 aa
AA seq
DB search
MSEIKFEDFRLGQDILKSIKNIGYKKPSKVQQQVIPLILQGKDVIVKSQTGSGKTAAFAI
PICEHMEIEENDAQALILTPTRELAVQIKEDISNIGRFKRIRCSAIFGKQPMDTQKKELK
QRVHIIVGTPGRTLDHIKRGNMNLQNIKFLILDEADEMLNMGFIEEVSEIIENIPVSRQN
MLFSATMPEAIENLSKKYMKNPAKVEITPEKLTVDNIEQKCYIIEENNKFSLLRNLLYIE
NPDTAIVFCRTKNNVDYVTSRMKAEKYSCDKIHGGMLQNERLDTMNSFKMGEFRFLIATD
VAARGIDIDNVTHVINYDLPMEKESYIHRIGRTGRAGNKGTAITFSTPNEDRFLSEIEDY
IQMEIPKCELPTEKDANQNKEAFLSKNKIKPLKKGKTADLNSEITKIYINAGKKKKIRPG
DIVGAISNSTGLSAEVIGVIDIHDTHSYIDILEGNGEKVLKALSEGTIKGKKVKVELASK
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaataaaatttgaagattttagattagggcaggatatactaaaatccattaaa
aatataggatataagaaaccttctaaggttcaacaacaagtaatacctttaattctgcaa
ggaaaagatgttatagtaaagtctcaaactggaagtggaaaaactgctgcctttgctatt
cctatatgtgaacatatggaaatagaagaaaatgatgctcaggccttaatactaactcca
actagagaactggcagttcagataaaagaagacataagtaacatagggagatttaaaaga
attagatgttcagctatttttggtaaacagcctatggatacacaaaagaaagaattaaaa
cagagggtacatataatagttggaactccaggaagaactttagatcacataaaaagagga
aatatgaatttacaaaatataaaatttttaattttagatgaagctgatgaaatgctcaat
atgggattcatagaagaagtaagtgaaattatagaaaatattcctgtaagtagacaaaat
atgcttttttcagctactatgcctgaggctatagaaaatttatcaaaaaaatacatgaaa
aatccagctaaagtagaaataaccccagaaaaacttacagtagataacatagaacaaaaa
tgttatattatagaagagaataacaaattttctttacttagaaatttactttatattgag
aatccagatactgcaatagtattttgtagaacaaagaataatgtggattacgttacaagt
agaatgaaagcagaaaaatactcttgtgataaaatacatggtggaatgcttcaaaatgaa
agattagatacaatgaatagttttaaaatgggagaatttagattccttatagctacagat
gtagctgctagaggtattgatatagataatgttactcatgtaataaattatgatttgcct
atggagaaagaaagctatattcacagaataggaagaactggtagagcaggaaataaaggt
actgctataacattttctactcctaatgaagatagatttttaagtgaaatagaagattat
atacaaatggaaataccaaagtgtgaacttccaacagaaaaagatgcaaatcaaaataaa
gaagcttttttaagtaaaaacaaaataaaaccgcttaaaaagggaaaaactgcagattta
aacagtgagataacaaagatatacataaatgcaggaaagaaaaagaagattagaccggga
gatatagtaggagctatttcaaattctactggacttagtgcagaagtaataggagttata
gatattcatgacactcactcttatattgatatactagaaggaaatggtgagaaggtatta
aaggctcttagtgagggcactattaaaggtaaaaaagttaaagtagaattagctagtaaa
taa
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