Clostridium carboxidivorans: Ccar_07150
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Entry
Ccar_07150 CDS
T03979
Name
(GenBank) helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cck
Clostridium carboxidivorans
Pathway
cck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ccar_07150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cck03019
]
Ccar_07150
03009 Ribosome biogenesis [BR:
cck03009
]
Ccar_07150
Enzymes [BR:
cck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ccar_07150
Messenger RNA biogenesis [BR:
cck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ccar_07150
Ribosome biogenesis [BR:
cck03009
]
Prokaryotic type
rRNA helicases
Ccar_07150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SMC_N
SLFN-g3_helicase
HdcB
AAA_19
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AKN30616
UniProt:
C6PSI7
LinkDB
All DBs
Position
1656933..1658081
Genome browser
AA seq
382 aa
AA seq
DB search
MTKTLFKELGINEKITEGLKKEGIEYATEIQVEAIPQAILNKDIVGEAETGSGKTLAYLA
PIFQNIDTNSKAVQAFILTPTHELAIQVNDVIKTLAEDSEIPVKSAAIIGNINIKKQIEN
LKNNKPHIVVGSTGRILQLIKLKKMKAHMIKTIVVDEADKLLDKNNVEDVKAIIKTTLKD
RQLMFFSATIDERTLDVAKTLMKEYEVIRTQGKTSMNENIEHMCFKCEQRDKILILRKVF
HILNPKKAIVFVNKPDEIEVLTEKLNYHGIKSESIYGTADKEVRKRALEDFKAGKINLLV
ASDIAARGLDIQDVECIFSYDIPEDTDNYLHRAGRTARAGKAGKSICIFTDREQSLIKQY
EKTFNIKINLKDMYKGKIIERR
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaactttatttaaagaattaggtataaatgaaaaaataacagaaggtttaaaa
aaagaaggcattgaatatgcaacagaaatacaagtggaggcaattccacaggctattttg
aacaaggatatagtaggggaagcagaaacaggcagcggaaaaactttagcttatttagct
cctatatttcaaaatatagatacaaatagtaaagcagtgcaggcatttatacttacacct
acacatgaacttgcaatacaggtgaatgatgtgataaaaactttagctgaagattcagaa
ataccagttaaatcagcggctataataggaaatataaatataaaaaaacaaatagaaaat
ttaaaaaacaataaacctcatatagtagtgggatctacgggtagaatacttcaacttatt
aagctaaaaaaaatgaaagcacatatgataaagaccattgtagttgatgaggcagataaa
cttttagataaaaacaatgtagaagatgttaaggctataataaaaactacattaaaggat
agacaattaatgtttttttcagcaactatagatgaaagaactttagatgtagcaaaaact
ttaatgaaagaatatgaagttataagaacacagggaaaaacttctatgaatgaaaatata
gaacatatgtgttttaaatgtgagcaaagagataaaatactaattttaagaaaggttttt
cacatattaaatcctaaaaaggctattgtatttgtaaataaacctgatgaaatagaagta
cttactgaaaagctaaattatcatggaataaaatcagaatctatatacggaaccgcagat
aaagaagtacgtaaaagagctctagaagacttcaaggcaggtaaaattaatttactcgta
gcttctgatatagcagctagaggtcttgatatacaggatgtagagtgcatttttagctac
gatataccagaagatactgataactaccttcacagagcaggaagaacagctagagctggt
aaggctggcaaatctatatgtatatttacagatagagagcagagtttaattaagcaatat
gagaagacttttaatataaaaataaatctaaaagacatgtacaaaggaaaaataatagaa
cgtaggtaa
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