Clostridium carboxidivorans: Ccar_19210
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Entry
Ccar_19210 CDS
T03979
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cck
Clostridium carboxidivorans
Pathway
cck03030
DNA replication
cck03430
Mismatch repair
cck03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cck00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ccar_19210
03430 Mismatch repair
Ccar_19210
03440 Homologous recombination
Ccar_19210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cck03032
]
Ccar_19210
03400 DNA repair and recombination proteins [BR:
cck03400
]
Ccar_19210
Enzymes [BR:
cck01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Ccar_19210
DNA replication proteins [BR:
cck03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Ccar_19210
DNA repair and recombination proteins [BR:
cck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Ccar_19210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AKN32859
LinkDB
All DBs
Position
complement(4316925..4320503)
Genome browser
AA seq
1192 aa
AA seq
DB search
MIKRKKVRVVEEKTYDWVSLHQHTGYSLLDSSAKIPELISKAKELGMKSIAITDHGVMYG
CVDFYKEAKEQGIKPIIGCEVYVAGKSMHIKQNDKENENYHLVLLVKNETGYKNLMKIVS
KASVEGFYYKPRTDHDYLKKHSEGLISLSACLGGEIQSYILKGNLSKAKEIALLYKDIFK
DGFYLELQYHGMEEQEKVNEELIKMSKELDIPLVATNDVHYIKKEDYKAHDVLLCIQTGK
VVNEENRMRYPSDEFYLKSPEEMYKIFSRVPEALENTVKIAEQCNFDYEFHKSKLPKFPL
PEHVEPYEYLRDLCYKGLIQRYKEFEQLKEVSFSIESVNELADSNDEAKKLVERLEYELS
IIKQMGYVDYFLIVWDFINFSVENGIMTGPGRGSAAGSIIAYTLGITKIDPIKYSLLFER
FLNPERVSMPDIDSDFCYERRGEVIDYVVRKYGENSVSQIITFGTMAARACIRDVGRAMN
YPYAEVDRIAKMIPAAPGKAITIDKALELNSELEEAYENEERTKALIDIARALEGLPRHT
STHAAGVVIASQPLVNYVPMQKNEDNIVTQFTMGTLEELGLLKMDFLGLRTLTVLRDAVS
MVKDNKGINIDLDKIDYDDKNVYKMIGEGKTVGIFQLESAGMTSFMKELRPDSLEDIIAG
ISLYRPGPMAEIPKYISNKNNPEGIEYLTPELESILGVTYGCMVYQEQVMEIVRKLAGYS
MGRSDLVRRAMSKKKHHVMEEERHNFIYGIVDEEGVEKVPGCIKNGISEDAADKIFDSMM
DFASYAFNKSHAASYAVVAFQTAYMIHYYPTEYIAAMLNSVKGDNEKVAYYTRFADEIGI
QVLTPNINESYAKFTVKEDKIRFGLSAIKNVGENVIDSIVKSRERKGVFSNLVDFCNKID
VSCINKRVVESLIKAGAFDCFKVYRSKLLAVYEKVLDGVSNSRKKNIDGQLSLFTDFKKI
EVKIEYPEIKEFEKRHILAMEKEMTGLYLSGHPLEEYEKSLSLQTSAKISDIIGDESLED
GTVGQQSKLKDGDKVIIGGIINSVTKKVTRNNDMMAFIKLEDLYGVIEIIIFPKVFQKYR
TLVDEDSIVIVKGRVSIREEEQPKILCESLEPVIKENGEKLYIQIEDESSLKNVLHETKS
LFLDFKGNVPVYFCTKKERKKFRLDRDLWINNDIELLSNLRKMFGDKNVKVI
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagaaagaaggtgagggtagtggaagagaagacatatgattgggtaagcttg
catcagcatacaggatattctctgctagattcttcagctaaaattccagaacttataagt
aaggctaaagaacttggaatgaagagtatagctataacagatcatggagtaatgtatggg
tgtgttgacttttataaagaggctaaagaacaaggcataaagcctataataggttgtgaa
gtatatgttgcaggaaagtctatgcacataaagcagaatgataaagaaaatgaaaattat
catcttgtgctgcttgtaaaaaatgaaacaggctataaaaatcttatgaaaatagtttcc
aaggcttctgtagaaggattttattataagcctagaacggatcatgattatttaaagaag
cacagtgaaggattgatatcactaagcgcttgcttaggaggagaaattcaatcttatatt
ttaaaaggcaatttgagcaaagcaaaggaaatagctcttttatataaagatatatttaaa
gatggtttttatcttgaacttcaatatcatggcatggaagaacaagaaaaggttaatgag
gaactaataaaaatgtccaaagaattggatataccattggttgctacaaatgatgtacat
tatataaaaaaagaagattataaagctcatgatgttttgttgtgcatccagacaggaaaa
gttgtaaatgaagaaaatagaatgagatatccatcagatgaattttatttaaaatcacca
gaagaaatgtacaagatattttctagggtgcctgaagctttagaaaatacagtaaaaata
gctgagcagtgtaattttgattatgaatttcataaatctaagcttcctaaatttccattg
ccagaacatgtagaaccttatgaatatttaagagatctatgttacaaaggattaatacaa
agatataaagaatttgaacagttaaaggaagtctcatttagcatagaaagcgtaaatgaa
ttagcagatagcaatgatgaagctaaaaaacttgtagaaagactagaatatgagctttct
atcataaagcagatgggatatgtagattatttcctaatagtatgggattttattaatttt
tctgtagaaaatgggataatgacaggtccaggaagagggtctgcagcaggatctataatt
gcatatacattgggaataactaaaatagatcctattaaatacagcttattgtttgaaagg
tttttaaatcctgaacgtgtatctatgccagatatagattcagatttttgctatgaaaga
cgtggagaggtaatagactatgttgtaagaaaatatggagagaatagtgtatctcaaatt
ataacctttggaactatggctgctagagcatgtataagagatgttggaagagctatgaat
tatccttatgctgaagtggatagaatagcaaagatgatacctgcagcaccaggtaaagcc
ataactattgataaagcattagagttaaattctgaattggaagaagcctatgaaaatgaa
gagagaacaaaagcgttaatagatatagctagggctttggaaggacttccaagacatact
tctactcatgcagcaggtgtagttatagcatcacagcctttagttaactatgtgcctatg
caaaaaaacgaagacaatatagtaactcaatttaccatgggaacattagaagagttggga
ctcttaaagatggactttttaggattaagaactctaacagtgcttagagatgcagtgagc
atggttaaggacaataaagggataaacatagacttagataaaatagattatgatgataaa
aatgtatataagatgataggagaaggtaaaactgtaggcatatttcagttagaatctgca
ggaatgacatctttcatgaaagaattaagaccggattctttggaggatatcatagcagga
atcagtctttatagaccagggcctatggcagaaatacctaaatatattagcaataaaaat
aatcctgaaggtattgaatatttaacacctgaattagaatccatattgggcgtaacctat
ggatgtatggtatatcaggagcaggttatggagatagttagaaagcttgcgggatactct
atgggtagaagtgacttagtaagacgtgctatgtctaaaaagaaacatcatgtaatggaa
gaggaaagacataatttcatatatggtatagtagatgaagaaggagtagaaaaagttcca
ggatgcataaagaatggaatatccgaagatgctgctgataagatatttgattccatgatg
gattttgcaagttatgcatttaataaaagtcatgctgcgtcttatgcagtagtggcattt
caaacagcttacatgatacattattatccaactgaatatattgccgctatgttaaacagt
gtaaagggtgataacgaaaaggttgcatactatactagatttgcggatgaaataggaatt
caagttttaactccaaatataaatgaaagctatgctaagtttacagttaaggaagataaa
ataagatttggactttctgctattaaaaatgtaggagaaaatgtaatagatagtatagta
aaatcaagagaacgtaaaggtgtattttcaaacttagttgatttctgcaataagatagat
gtttcatgcataaataaaagagtagtagaaagtcttataaaagcaggagcctttgattgt
tttaaggtatatagatcaaaattacttgcagtctatgaaaaggtattggatggagtaagt
aattctagaaaaaaaaatatagatggacaattgagtctttttacagattttaaaaagata
gaagttaagatagaatatcctgaaataaaggaatttgaaaaaaggcatattttagctatg
gaaaaagaaatgacaggactttatttatcaggacatcctttagaagaatatgaaaaaagt
ttatcactgcaaactagtgctaaaatatcagacataataggtgatgaatctttagaagat
ggaacagttgggcagcagtctaaattaaaggatggagataaagtaattataggtggtatt
ataaattcagtaacaaaaaaagtaactagaaataatgatatgatggcttttataaaatta
gaagatttatatggagtaatagaaattataatattcccaaaagtatttcaaaaatataga
actttagtagatgaagatagtatagtaatagtaaagggaagagtgagtataagagaagag
gaacagcctaaaatattatgtgaaagcctagaacctgtaataaaggaaaatggtgaaaag
ttatatatacaaatagaagatgaaagtagtttaaaaaatgtgcttcatgaaactaaatct
ttgtttttagattttaaaggaaatgtacctgtatatttttgtactaaaaaggaaagaaag
aaatttagattggatagggatttatggataaataatgatatagaactgttatctaatctt
aggaaaatgtttggagataaaaatgttaaagtaatttaa
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