Clostridium carboxidivorans: Ccar_19860
Help
Entry
Ccar_19860 CDS
T03979
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cck
Clostridium carboxidivorans
Pathway
cck03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cck00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ccar_19860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cck03021
]
Ccar_19860
03400 DNA repair and recombination proteins [BR:
cck03400
]
Ccar_19860
Enzymes [BR:
cck01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ccar_19860
Transcription machinery [BR:
cck03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ccar_19860
DNA repair and recombination proteins [BR:
cck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ccar_19860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AKN32985
UniProt:
C6Q0W7
LinkDB
All DBs
Position
complement(4444691..4448230)
Genome browser
AA seq
1179 aa
AA seq
DB search
MFELNNFDALQIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPIKDWEC
HCGKYKRIRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKILYFASYVVLDPKETPLLKKQLLNEKEYREAVDKYGDESFVAGMGAESIKRLL
EEIDLEQSSIELKEDLKTSTGQKKVRIIRRLEVVESFRKSRNRPEWMIIDVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMALELFKPFVMKKLVESGVAHNIKSAKRMVERVQSQVWDVLEEVISDHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLACTAYNADFDGDQMAVHVPLSVEAQSEARFLMLAAHNI
MKPSDGKPVVIPTQDMVLGSYYLTIDKDEELGEGRYFSSPDEVIMVYQLKQISIHAKIKV
KMSKIEDGKLITGIIDTTPGKIIFNESIPQDLGFIDRSLPENEFKLEVDFLVTKKNLGTI
IDKCYMKHGATKTSIMLDKIKAKGYHYSSIGAITVSTSDMEVPEAKKTLLAETDAAVDKI
QKMYRRGFISEDERYERVIERWTKTTEDVADALMDNLDRFNPIFMMADSGARGSKSQIKQ
LAGMRGLMANPSGKIIELPIRASFREGLNVMEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVREEDCGTQAGYDVSEIKEGNEVIESLAERLTGRYSAEDIMDPNTGEILVH
KNDYMDSKIAEKVDKLGIKKVTIRSVFTCKSKHGVCAKCYGMNMATAQKISMGESVGIIA
AQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARKPKGLAIVSEVSGTVKMEET
KKKRTISVITDAGEEVTYDIPFGSRIKVSNGDAISAGDEITEGSVNPHDIIRIKGVLGVK
NYLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKIKIEDSGDTELLPGTMIDMFDFDEQNA
KAEARGERPAQGRVALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKVDPLLGLKEN
VIIGKLIPAGTGMTRYRSIKINTEKESEEKQISNNEIEV
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattaaataattttgatgcattacaaatagggttggcttcaccagaaaaaata
agagaatggtcaagaggtgaagtaaaaaagcctgaaacaataaattacagaactttgaaa
cctgaaagagacgggctattttgtgaaagaatttttggacctataaaagactgggaatgt
cactgcggtaaatataaaagaataagatacaaaggcatagtatgtgatagatgtggtgta
gaagttactaaagctaaagtaagacgtgagagaatgggccatatagaattggcagcacct
gtatctcatatttggtactttaagggaataccatcacgtatgggacttatattagatatg
tcaccaagagcgctagaaaaaatactatattttgcatcttatgttgtattagatcctaaa
gaaactccattactaaaaaaacaactgctaaatgaaaaagaatatagagaagctgttgat
aaatatggtgatgaaagttttgttgctggaatgggtgctgagtctattaaaagactttta
gaagaaatagatttggaacaatcatctattgagttaaaagaggatttaaaaactagcaca
ggacagaagaaagtaagaataataagaagacttgaagtagtagagtcatttagaaaatct
agaaatagacctgaatggatgattatagatgtaattcctgtaattcctccagatttgaga
cctatggttcaacttgatggtggaagatttgcaacatcagatttaaatgatctttacaga
agagttattaatagaaataatagacttaaaaaacttttagatttaggtgcaccagacata
atagttagaaacgagaaaagaatgcttcaagaagcagtagatgcacttatagataatgga
agaaggggaagaccagtaactggtcctggaaacagacctctaaaatcattatctgatatg
ttaaagggtaagcaaggaagatttagacaaaacttgcttggaaaacgtgttgactactca
ggacgttcagttatagttgttggacctgaacttaagatgtatcagtgcggacttccaaaa
gaaatggcacttgaattatttaagccttttgtaatgaaaaagcttgttgaaagtggagtg
gcacataatataaagagtgctaagagaatggttgaaagagttcaatctcaagtatgggat
gtacttgaagaagtaatatctgatcatccagtacttctaaaccgtgctccgactcttcat
agattgggaattcaagcattccaacctgtacttgtagaaggtagagctataaaacttcat
cctttagcatgtacagcgtataatgcagattttgatggagaccaaatggcagtccatgtt
ccactatctgttgaagcacaatcagaagctagatttttaatgcttgctgcacataacata
atgaaaccatcagatggtaagccagttgttattcctactcaggatatggttctaggttca
tattatctaacaatagataaggatgaagaattaggagaaggaagatatttctcatcacca
gatgaagtaattatggtttaccaattaaagcaaattagtattcatgctaagataaaagta
aaaatgagcaaaattgaagatggaaaacttattactggaataatagatacaacaccagga
aaaataatatttaacgaatcaataccacaagatttaggatttattgatagaagtcttcca
gaaaatgagtttaaattagaagtagatttccttgtaacaaagaaaaaccttggtacaatt
atagacaaatgctatatgaagcatggagctactaaaacatctataatgcttgataagata
aaagcaaaaggatatcactactcaagtataggagctattacagtttctacttcagatatg
gaggttcctgaagctaagaaaacattacttgcagaaactgacgcagcagttgataaaatt
cagaaaatgtatagaagaggttttatatctgaagatgaaagatatgaaagagttatagaa
agatggactaaaacaacagaagatgttgcagatgcacttatggataacttggatagattc
aacccaatatttatgatggcagattcaggagccagaggttctaagagccagattaagcaa
cttgctggtatgagaggtcttatggctaatccatctggtaagattatagaattacctata
agagcttcattcagagaaggtctaaacgtaatggaatactttatatcaactcacggagct
agaaaaggtaatgcagatactgctttaaagactgcagactcaggatatttgacaagaagg
ttagttgatgtaagccaggatgttatagtaagagaagaagattgtggaacacaagcagga
tatgatgtttctgaaataaaggaaggaaacgaagtaatagagagcttagctgaaagactt
acaggaagatattcagcagaagatataatggatccaaatactggtgaaatattagtccat
aaaaatgattacatggatagtaagattgcagagaaagttgataagttagggatcaaaaaa
gtaacaattagatctgtatttacatgtaaatctaaacacggagtatgtgcaaaatgttat
ggaatgaatatggctactgctcaaaaaataagtatgggagaatctgttggtataatagca
gcacaaagtataggagaaccaggtactcagcttactatgagaactttccatactggtgga
gttgctgggtctgatataactcaaggtcttccaagagttgaggaattatttgaggctaga
aaacctaagggtcttgctatagtaagtgaagtttctggtactgtaaaaatggaagaaact
aagaagaagagaactatttctgtaattacagatgcaggtgaagaagtaacttatgatata
ccatttggttcaagaattaaggtatctaatggagatgcaataagtgctggagatgaaata
acagaaggttctgttaatccgcatgatataataagaattaaaggtgttttaggagttaaa
aattatcttctatctgaagttcaaaaagtttatagattacaaggtgttgatataaatgac
aaacatcttgaagtagtagtaagacagatgacaagaaaaataaaaatagaagattctggt
gatacagaattattaccaggtacaatgatagatatgtttgattttgatgaacaaaatgca
aaagcagaagctagaggtgaaagaccagcacaaggtagagttgcgttacttggtataact
aaggctgctttggctacagattcattcctttcagctgcttcattccaagaaacaacaaga
gtacttactgatgcagctattaaaggaaaagttgatcctttactaggattaaaagaaaat
gtaattattggtaagttgatacctgctggaacaggtatgacaaggtacagatctatcaaa
atcaatactgaaaaagaatcagaggaaaaacaaattagtaataatgaaatagaagtttaa
DBGET
integrated database retrieval system
