Clostridium carboxidivorans: Ccar_23500
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Entry
Ccar_23500 CDS
T03979
Name
(GenBank) ATP-dependent helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
cck
Clostridium carboxidivorans
Brite
KEGG Orthology (KO) [BR:
cck00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cck03400
]
Ccar_23500
Enzymes [BR:
cck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ccar_23500
DNA repair and recombination proteins [BR:
cck03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Ccar_23500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_12
ResIII
AAA_30
CA109-like
Cullin_Nedd8
Motif
Other DBs
NCBI-ProteinID:
AKN33624
LinkDB
All DBs
Position
5223791..5227522
Genome browser
AA seq
1243 aa
AA seq
DB search
MDTKWTQEQREAIFTKNCNLLVAAGAGAGKTAVLVERIIQKITDNEDDVDVDKLLVVTFT
NAAASEMRERIGDAISKKLEVMPESKNLQKQLMLLNKSNIMTIHSFCLQVIKNNFHIIDL
DPNFRVCDETESILLKQETIDEVFEDKYEQSDEGFIQLVKCYGGKNDFKVENMILDLYEF
AKSNPWPEKWISTMVERFNVEEDFNFEKSPWFPVILDYMIVELQGCKSKMEKAIEIVENA
QGINYYLEPMKKDLQNINNIMQCISLEELKYQFDNLQFEKLPVKRNKDADKEAKEKSKKI
RDDVKKKITEISEDIFLKMSSMGKDLKEMYPKMKSLGKIVMEFNERYGAKKRERGLVDFN
DIEHFCLNILIDTKENGDITPSKIALEYRQKFEEILIDEYQDSNEVQEVIMNAISKKNDI
PNTFMVGDVKQSIYRFRQAKPELFLDKYNRYSDNRVGNERKIKLFKNFRSRPEIIFAVNY
VFNQIMSVNIGELEYDEGEMLKSGADFPELGENVMDAESKIELHLLDKKDNEVCEDNSQN
PEGAEAENINEETPDNIQIEARLVGKRIIDLINNEKFKVYDKDEKKYRNVTYKDIVILLR
TTSNWAPTFVEELKSFGIPVFADTNTGYFDNIEIRTIISLLQIIDNPIQDIPLLSILRSP
IEGFSSEEIIDIRMVDRNINFFSALKIIIESDDADERIKHVSKELKDKVSNFLNKLKKWR
KKSLYMPIDEFIWYIYTDTGYYGFVGAMPGGKQRQANLRILFQRAKQYESTSYKGLFNFI
NFINKLRNSSGDMGSAKILGENEDVVRIMSVHKSKGLEFPVVILSGTGKNFNLMDMNRSV
LFHSELGLGPEYVNIDRRISYPTIAKQVLKKKIKVETLSEEMRILYVALTRAKEKLIITG
TAKDLEKTSEKWCEAIKYEEGKIPEYVVINAKNYLDWIVPAVAKHLSGKVIRDIGGVYDF
EPLVDDKSKWCVKLWRKENFKNDLRDENEKEDIIKIVKDESLNGGNSIYYEEVNRRLNWQ
YKYKESCNIPSKFSVSEIKRRFDFLSADEGSSFLVDSSKLNKPVFLQKTTKLSASEKGTL
LHTVMQHVDLKKVSNYEEISNQVNDLVNREFITREEANSIDANKILKFFNSSLGKRMIKS
KKVLREVPFIVSLDSTELYKDLPRDVYGEEKVLLQGIIDCYFEEDDELVLLDYKTDYVDD
LDKIKERYSVQIKCYKNALERLTGKNIKNKYLYLFYNDEILEL
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atggacacaaagtggacgcaagaacaaagagaagcaattttcacaaagaattgtaatctt
ttagtagcagcaggagcaggggcaggaaaaacagcagtgcttgtagaaagaataatacaa
aaaataacggataatgaagatgatgtagatgtagataaacttttagttgttacttttact
aatgcagctgcttctgaaatgagggaaaggattggagacgctatttcaaaaaagttggag
gttatgcctgaatcaaaaaatcttcaaaaacagctgatgttgttaaacaaatcaaatata
atgactatacattctttttgtcttcaggttattaaaaataattttcatattatagattta
gaccctaattttagagtttgtgatgaaactgaatccatacttttgaaacaggaaaccatt
gatgaagtttttgaggataaatatgagcaaagtgatgaaggctttatacaacttgtaaaa
tgctatggaggaaaaaatgactttaaagttgaaaatatgatattagatttatatgagttt
gccaaaagtaatccatggcctgaaaagtggatttcaacaatggtagaaagatttaatgtt
gaagaggattttaactttgaaaaatctccctggttccctgtaattttagactatatgata
gttgaattacaaggctgcaaaagtaaaatggagaaagcaatagaaatagtagaaaatgct
caaggtataaattactatttagaacctatgaaaaaagatttgcaaaatataaacaatata
atgcaatgcataagtttagaagagttaaaatatcaatttgataatttacagtttgaaaaa
cttcctgtgaaaaggaataaggatgctgataaagaagcaaaggaaaagtcaaagaaaata
agagatgatgtaaagaaaaaaattactgaaatatcagaagatatttttttgaaaatgagc
agtatgggtaaggacttaaaagaaatgtatcctaaaatgaagtctttaggaaaaatagta
atggagtttaatgaaagatatggagctaaaaaaagagaaagaggattagttgattttaat
gacattgaacatttttgtcttaatatacttatagatacgaaggagaacggagatataaca
ccttcaaaaatagcattggagtatagacaaaaatttgaggaaatacttatagatgagtat
caagatagtaatgaagtacaagaggtaattatgaatgctatctctaaaaaaaatgatata
ccaaatacatttatggttggagatgtgaaacaaagcatatacaggtttaggcaagctaag
ccagaattgtttttagataaatataataggtattcagataatagagtgggaaatgagaga
aaaataaagctttttaaaaattttaggagcagacctgaaataatttttgcagttaattat
gtatttaatcagataatgtccgtgaatataggtgagcttgaatatgatgaaggagaaatg
ttaaaaagcggagcggattttccagaattaggagaaaatgtcatggatgccgaaagtaaa
atagaacttcatttattagataaaaaagataatgaggtatgtgaagacaatagtcagaat
ccagaaggtgctgaagctgaaaatattaatgaggaaactccagataatatacaaatagaa
gctagattagtaggaaaaagaataatagatttaataaataatgagaaatttaaagtgtac
gataaagacgaaaaaaagtatagaaatgttacgtataaagatatagtaatcttattaaga
actacatcaaattgggcacctacttttgtagaagaacttaaaagttttggtatacctgta
tttgcagatactaatactgggtattttgataatatagaaataagaactataatttctctc
cttcagataattgacaatcctattcaagatattcctctattatccatacttagatctcct
atagagggattttcatcagaagaaattatagatataagaatggtagatagaaatataaat
ttctttagtgcattaaagataataatagaaagtgatgatgcagatgagagaattaaacat
gtaagcaaggaacttaaagataaggtaagtaattttcttaacaagcttaaaaaatggaga
aaaaaatctttatatatgcctattgatgaatttatatggtacatttacactgatacagga
tactatggttttgttggggctatgcctggaggaaaacaaagacaggctaacttaagaatt
ttgttccaaagggctaaacaatatgaaagtacaagttataaaggtttatttaattttata
aatttcataaacaagctaagaaatagcagtggagatatggggagtgctaaaattcttgga
gaaaatgaagatgttgtaagaattatgagtgtgcataaaagtaaggggttagaatttcct
gtagttatactttcgggaacaggtaagaattttaatttgatggatatgaacagaagtgta
ctctttcatagtgaactagggttgggaccagaatatgtaaacatagatagaaggattagt
tatccaactattgctaaacaggtacttaaaaagaaaataaaagttgaaaccctatctgaa
gaaatgagaatactatatgtagcacttacaagagcaaaagaaaaacttataataacaggt
actgctaaggatctagaaaaaacttcagaaaaatggtgtgaagctataaagtatgaagaa
ggaaaaatacctgaatatgtggtgataaatgctaaaaactatttagattggatagtacca
gctgtagctaagcatctatctggaaaggttataagagatataggtggtgtgtatgatttt
gaacctttagtagatgataagtctaaatggtgtgttaagctttggagaaaggaaaatttt
aaaaatgacttacgtgatgaaaatgagaaagaagatataattaaaatagtaaaagatgaa
tcgttaaatggtggcaatagcatatattatgaggaagttaatagaagactcaattggcag
tataaatacaaagagtcctgtaatataccatcaaagttttctgtatcagagataaagaga
agattcgattttttatcagcagatgaaggaagttcatttttagttgattctagtaaatta
aataaacctgtatttcttcagaaaacaacaaagttatcagcatcagagaagggaacgctt
ctacatactgttatgcagcatgtagatttgaaaaaagtttctaactatgaagagatatct
aaccaggtgaatgacttagtaaatagagaatttataactagagaagaagctaattcaatt
gatgcaaataaaatattaaagttttttaactctagtttaggaaaaagaatgataaaatca
aaaaaagttttaagagaagttccttttattgtaagtttagatagcactgagctttacaaa
gatttgccaagagatgtatatggagaggaaaaagtacttttgcagggaataatagactgt
tattttgaagaagatgatgaattagtgcttttagattataaaacagattatgtagatgat
ttagataagattaaagaaagatattcagttcaaattaagtgctataaaaatgcgcttgaa
agattaacaggaaaaaatataaaaaataaatatttatatttattttataatgatgaaata
ttggaactttaa
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