Clostridium carboxidivorans: Ccar_24140
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Entry
Ccar_24140 CDS
T03979
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cck
Clostridium carboxidivorans
Pathway
cck03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cck00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ccar_24140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cck03400
]
Ccar_24140
Enzymes [BR:
cck01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Ccar_24140
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Ccar_24140
DNA repair and recombination proteins [BR:
cck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Ccar_24140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_6
Prok-RING_1
A2L_zn_ribbon
Zn_Tnp_IS91
Zn_ribbon_9
ProRS-C_1
Motif
Other DBs
NCBI-ProteinID:
AKN33748
UniProt:
C6PTE3
LinkDB
All DBs
Position
5371087..5371920
Genome browser
AA seq
277 aa
AA seq
DB search
MPELPEVETVKRVLEPQIKGQKIKYVDISNKQVIAYPDAEAFCDNVIGQTIVGIGRRGKF
LNILFESGDRMVLHLRMTGCLLITPSEYEKAKHTHVVFSLKNGNELRYIDTRRFGRFWFL
KKDEEDTFTGINKLGLEPFDKNLTGEYLHNCLLKKKKPIKECLLEQSMVAGIGNIYGDEI
LFAAGLCPSRPANSLTCEEYDRLAKQISVTLAYFIEKNAISPEDYLAGKGLKYRNTPYLK
VYGHEKEKCPVCRHDLKKIMLAGRSSVFCPNCQRETP
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattgccagaggtggaaacggtaaaacgtgtgcttgaaccacaaattaaggga
caaaagataaagtatgttgatattagtaataagcaagttatagcttatccagatgcagag
gctttctgtgataatgtaataggtcaaaccattgtaggtattggacgtagaggaaaattt
ttgaacattttgtttgaaagcggtgaccgaatggttttgcatttgaggatgacagggtgt
ttacttatcactccttctgaatatgaaaaagcgaagcatacccatgttgtattctctctc
aaaaacggaaatgaactccggtatattgatactaggaggtttggccgtttttggtttttg
aaaaaggatgaggaggatacctttactggcattaataaactggggctggagccatttgac
aagaatctgaccggggaataccttcataactgtttgttgaagaagaaaaagcctatcaaa
gaatgtttgcttgaacagagtatggtggctggaatcgggaatatctatggagacgaaatc
ctatttgcagcaggcttatgtcctagccgtcctgcaaatagccttacatgtgaggaatac
gacagacttgcaaaacagatatcagtaacattagcatatttcattgaaaagaatgccata
tctccagaggactatcttgctggaaaaggtttgaagtatagaaatacgccatatcttaaa
gtctatgggcatgaaaaagagaaatgcccagtatgtagacatgatttaaaaaaaattatg
cttgcaggcagaagcagtgtgttttgtccaaattgtcagagagaaacgccataa
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