Clostridium carboxidivorans: Ccar_24285
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Entry
Ccar_24285 CDS
T03979
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cck
Clostridium carboxidivorans
Pathway
cck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ccar_24285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cck03019
]
Ccar_24285
03400 DNA repair and recombination proteins [BR:
cck03400
]
Ccar_24285
Enzymes [BR:
cck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ccar_24285
Messenger RNA biogenesis [BR:
cck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ccar_24285
DNA repair and recombination proteins [BR:
cck03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Ccar_24285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AKN33774
UniProt:
C6Q202
LinkDB
All DBs
Position
5406141..5408141
Genome browser
AA seq
666 aa
AA seq
DB search
MGIINVDGLFNKYFPNLANEFLLKGCSLKDFQKSVVTNVLEGNNTLCIMPTGGGKSLIYW
LSGLSLQGITIVISPLIALIDEQTEKIREQGYEVLTIHGEISANKQVNILKKFSNGEVNP
DFIFVSPERISTDGFFEYCIRLRKDEIKLIAIDEVHCVSQWGFSFRPFYKRIPEFLDSVY
KHSESVPITLGLTATLNSKEITDICNDFRIDKDNVIKDDALIRSEIALKVLKFENEKEKE
DKFWELLNIHKNEKILVYLYRKYHQRGVENLTKDALERGFKATGFHGDMSSKDRQEIINR
YKNNDIDVIFATNAFGMGIDIPDIKVVIHFMIPESVEQYYQEIGRGARDIPAANAYVLYT
NKNIQVKKTHFIDRSFPNIEELKECYNKITSNKIGLKTLQYFEDETIQKCLPYFLDNDLL
SIRCKGVSNLKMLSDIKLQELEDIFNATKTKGIITTIKKTGLDPQYITNLIYLAVLQEKV
TLQKGFPKCLIVESKCKNISDEKAEQLKEYIEEKKQYKHKLLDYFVYLLDEDNSSIQLHQ
EIGKYLGVPKFKLGRIYSTLKGDKVRSKSEVIIANLLYENGIEYEYEKKLFYRSGKIVPD
FTITLSNGREKYWEHLGMIGTEKYDKRWTQKLKIYQENFPDQLEVTYEGATISDSAKRLI
EQLKRI
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgggtattattaatgtagatggtttattcaataaatattttcctaatcttgcaaatgaa
ttcttattaaaagggtgctcattaaaggactttcagaaatctgtagttactaatgtatta
gaaggaaataatactttatgcatcatgccaacaggtggaggtaagtcattgatatattgg
ctttctggactatctttacaaggaatcactattgtaatctcaccattaattgccctaatt
gatgaacaaactgaaaagattagagaacaaggatatgaggttttaaccatacatggagaa
ataagtgctaataagcaagtaaatatattaaagaagttcagcaatggggaagtgaatcct
gattttatttttgttagtccagaaagaatttcaacagacggattttttgagtattgtatt
agattaagaaaagatgagataaaattaatagctattgacgaagtgcattgtgttagtcaa
tggggatttagttttcgtcctttttataagaggatacctgagtttttagattcagtatat
aaacattcggaatcagttcctattacattaggattaactgcaacattaaattctaaagaa
ataacagatatatgtaatgactttagaatagacaaagataatgtaataaaggatgatgca
ttgattagatctgaaatagcactaaaggttttgaaatttgaaaatgaaaaagaaaaagaa
gataagttttgggaacttttaaatatacataaaaatgaaaaaatcttggtttatttatat
agaaaatatcaccaaagaggagtagaaaatttaactaaagatgctcttgaaagaggtttt
aaagcaactggattccatggcgatatgtcttcaaaagacagacaagagataataaatagg
tataagaataacgatatagatgttatttttgcaactaatgcttttggtatgggaatagat
ataccagatataaaagttgtaattcattttatgatacctgaatctgtagaacaatattat
caagaaattggtagaggagcacgtgatatacctgctgccaatgcatatgtactttatact
aataaaaatattcaagtaaagaagacccactttattgataggtcatttcccaatatagaa
gagttgaaagaatgctataataaaattacaagtaataaaattggtttaaagacattacaa
tattttgaagatgaaacgatacaaaaatgtcttccatatttcttagataatgatttatta
tctatcagatgtaagggagtttcaaacctaaaaatgctctcagatattaaattacaagaa
ttagaagatatatttaatgctactaaaaccaaggggattataactactataaagaaaact
ggattagatcctcaatatattactaatcttatttacttagcagtattacaagaaaaagtt
acgttacagaaaggttttcctaaatgtttaatagttgaaagtaaatgtaagaatatatcg
gatgaaaaggctgaacaattaaaggaatatatagaagagaaaaagcaatataaacataag
ttgctagactattttgtgtacctactagatgaagataattcatcaatacagttacatcaa
gaaattgggaaatatctaggtgtaccaaaatttaaattaggtcgtatatattctacatta
aaaggtgataaggtaagatcaaaatcagaagttattattgcaaatttattatatgagaat
ggaatagaatatgaatatgaaaagaaacttttctatcgaagtggtaaaattgtacctgat
tttactataactttatcaaacggaagagagaagtactgggaacatttaggtatgataggc
acagaaaagtacgataaaagatggacccaaaagctaaaaatatatcaagaaaattttccg
gatcaattggaggttacttatgaaggagcaacaataagtgattcggcgaaacgattaatt
gaacaacttaaaagaatataa
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