Acetivibrio clariflavus: Clocl_3530
Help
Entry
Clocl_3530 CDS
T01661
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
ccl
Acetivibrio clariflavus
Brite
KEGG Orthology (KO) [BR:
ccl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccl03016
]
Clocl_3530
Enzymes [BR:
ccl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Clocl_3530
Transfer RNA biogenesis [BR:
ccl03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Clocl_3530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AEV70008
UniProt:
G8LYM0
LinkDB
All DBs
Position
complement(4164884..4165417)
Genome browser
AA seq
177 aa
AA seq
DB search
MRLFISLNFDSEIKAKIYDIINKVKSNSIQGKFVNEEHIHLTLEFLGEIQKNRLNTIKEI
MNELNFEAFTFGLTKVGYFKRPEGNIYWLGVENNDTLFNMQKKLHQSLIEKDFELENREY
KPHITIGRKVILKDGFDTGELKDTLEKIKIDINKVDLMKSEFINGKLIHSLIYSKPL
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
atgagattatttatatcgctaaattttgatagtgagataaaagctaaaatttatgatata
attaacaaggtcaagtcaaattccattcaaggcaaatttgtaaatgaggaacatatacat
cttacattagagtttttaggagagatacagaaaaatagattgaataccatcaaggaaata
atgaatgaacttaattttgaggcatttacgtttgggttaaccaaagtaggatattttaag
agaccggaagggaatatttattggttgggagtagaaaataatgataccctattcaatatg
cagaaaaaattacatcaaagcctgatagagaaggactttgagttggaaaacagagaatat
aaacctcatataaccataggaagaaaggttatattgaaagatggctttgacacaggtgaa
cttaaggatactttggagaaaataaaaattgatataaataaagtcgatttaatgaaatcg
gaatttataaacggaaagctaatacattctttaatatattcaaaaccgttgtaa
DBGET
integrated database retrieval system
