Corticium candelabrum: 134178029
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Entry
134178029 CDS
T11492
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cclm Corticium candelabrum
Pathway
cclm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134178029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclm03041
]
134178029
Enzymes [BR:
cclm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134178029
Spliceosome [BR:
cclm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134178029
Complex C
U5 SnRNP specific factors
134178029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
BRR2_plug
Helicase_C
DEXQc_Suv3
AAA_22
SWI2_SNF2
AAA_30
Motif
Other DBs
NCBI-GeneID:
134178029
NCBI-ProteinID:
XP_062500793
LinkDB
All DBs
Position
1:complement(10062684..10086224)
Genome browser
AA seq
2142 aa
AA seq
DB search
MADLSARRVQYEYKANSNLVLQVDRSLIDRPGRDEPTGEVQTLVGKMVGTKMGDRSLRSR
PPVPKFEEQEAKRAKRESRSSARGSGSVLAKDVDELSGINYQPKTRETRSTYEVLLSFIQ
AAIGDQPRDILCGAADEVLATLKEDKLKERDKKKEVESLLGSMTEERFSLLVNLGRKITD
YTSVKESGGAGAEADIDEDYGVAVVFEGEDDEAQKAEYREDIGEEDSADEAEGEEADDKL
ILHTDLDSSKLGGHRESDELHPRAIDAYYLQRELNKFYNDHIVSQKKGEEVLDILKDAAD
DRDCENKLVLLLGFDQFAFIKLLRQNRMKVLYCTLLARAENAEEKRQLEEKMAGDAHLLP
ILQALNVMESEDLVQEERARKSSQRKSKVESGLEVEGEEQLETKGGRIKKILDLDDLVFT
HGGHFMANKKCTLPDGSFRKTRKGYEEVHVPALKPKPFSGDEALMKIDDLPEWCRPAFGN
YTSLNRIQSRLADTALGTDENLLLCAPTGAGKTNVALLTILREIGKHLNEDGSVQLDDFK
VIYVAPMRSLVQEMVGNFSKCLGPFGVKVNELTGDHQLNREQIAETQVIVCTPEKWDIIT
RKSGDRTYAQLVGLVIIDEIHLLHDDRGPVLECIVARTLRHVEATQEPVRLVGLSATLPN
FEDVATFLRVDPSKGLFFFDNSFRPVALEQTYVGITEKKALKRFQVMNEVVYEKVIDHAG
KNQVLVFVHSRKETAKTARAIRDMCLDRDTIGHFLREDSASAEVLRSEAEQTKNQELKDL
LPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVTIKGTQVYSPE
KGRWVELGALDVLQMFGRAGRPQYDSRGEGILITSHSELQYYLSLLNQQLPIESQFVKRL
ADNLNAEIVLGTVQNVKEAALWLGYTYLYIRMLRSPTMYGVSYDELESDPLLEQRRVDLI
HTAAALLDKHSMIKYDKKTGNFQVTELGRIASHFYCTHETMATYNSLLKPTLSQIELFRV
FSLSSEFKYITVREEEKLELSKLLERVPIPVKESIEEPSAKVNVLLQAYISQLKLEGFAL
VADMVYVTQSAGRLLRAIYEIVLHRSWAQLTDRTLSLCKMVNKRMWSSMSPLRQFKRMPM
EVVIRLEKKEEFAWERLYDLNHTEIGELIKNPKMGKTIHRFVHQFPKLELTTHIQPISRS
SLKVELTVTPDFQWDEKVHGHSQGFWIFVEDVDSEVTLHHEFFLLKSKYATDEHTLEFFV
PVFDPLPPQYFIRVVSDSWIGSETQLPVSFRHLILPEKNPPPTELLDLQPLPMSALRNET
YESLYNERFQFFNPIQTQVFNMLYNGDENMLIGAPTGSGKTLCAELAIMRLFNEMPEGRC
VYVTPLQELAEEVYSDWEVKFGRHLGKRVVLLTGETSADLKLIARGNVIVGTPDKWDILS
RRWKQRKNVQNVNLFVVDECHLIGGADGPVIEVVCSRMRYIASQIEKQIRIVALTSPLAN
AKDVAQWLGAGTHNTFNFHPNVRPVPLELHIQGFNVSHAASRLMAMAKPIYHAICKHSPQ
KPVIVFVPSRKQARLTAIDLLTFAGAERQPQRFLHCPESALTDHLHLIKDKTLREMIVNG
VVYAHEGLSDTELQVVRQIFNSGAAQVVIVSKGLCWALGMSSHLVVVMDTQEYDGCGHRY
VDYPITDLLRMIGYAGRPIHDDDGKCVVMCQSSKKDVFKKFLFEPLPVESHLDHYLHDHF
NAEIVTKTVENKQDAVDYLTWTLIYRRMTQNPNYYNLQGVTHRHLSDHMSELVENTLADL
QQSKCIAIEDDIDVQPLNLGMIAAYYCINYTTIELFSMSLNEKTKMKGLIEIIASASEYE
TIPLRHHEAAILKQLSSRVPLKLPSASKFNDPHVKANLLLQAHMSRMQLSAELQQDTEKI
LAKALRLIQACVDVLSSNGWLNPAMQAMELAQMVTQAMWSKDSHLKQLPHFSADVIKRCQ
QKSIETVFDVMDMEDDSRTELLQISDSQMQDVARFCNHYPNIELNYEVLEKDEITSGSAV
VVEVSLEREDEVAGPVIAPFFPQKREEGWWVVIGEALTNSLISIKRVVLQQKATVNLDFM
APAIGQHNYMLYFMCDSYMGCDQEYSFSIDVKEGEDSDSDEA
NT seq
6429 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttgtcggcgagacgtgtacagtacgaatacaaagcgaattctaaccttgtg
ctgcaagtcgatcgctctctaatcgatcgtccaggcagagatgaaccgacaggcgaagtg
cagactctggtggggaaaatggttggaaccaaaatgggcgacaggtctctgcgcagcaga
ccacctgttcctaaattcgaagaacaagaggcgaagcgtgccaagagagaatccaggagc
agtgcaagaggaagtggtagtgttttagccaaagatgtagatgaactgagtggaattaac
tatcaaccaaagacacgagaaactaggtccacatatgaagttcttcttagtttcattcaa
gctgccattggtgaccaaccaagagacatcttgtgtggtgctgcagatgaggttctagca
actctgaaagaagacaaactgaaagagcgagataagaaaaaggaagtggaaagtctttta
gggtcaatgaccgaggagaggttttcactgctagtgaatcttggaaggaaaattactgac
tatacgagtgtaaaggagagtggaggagcgggtgctgaagcagatattgatgaggattat
ggagtggctgttgtgtttgaaggagaagatgatgaggctcagaaagctgagtatcgagaa
gatattggagaagaagactcggctgatgaggcagagggagaagaggccgatgacaagctc
attcttcatactgacttagacagcagcaaactgggaggtcatcgtgaatctgatgaactt
catcctcgagctattgatgcgtactacttacagcgagagcttaataagttctataatgat
cacattgtatcacaaaagaaaggagaagaagtgttggacatattgaaggatgctgctgat
gatcgagattgtgagaacaagcttgtgttgttgctgggatttgaccagtttgctttcatc
aagttactcaggcagaatagaatgaaagttttgtattgcactcttttggctcgtgctgag
aatgctgaggagaaacggcagctagaggagaagatggcaggagatgctcatctgttgcca
attcttcaggctttgaatgtcatggaatctgaagatctggtacaggaagagagagctcgg
aaatcgtctcaaaggaaaagcaaagtagagtcaggcctggaggttgaaggggaggagcag
ctagaaaccaaaggaggaaggataaagaagattcttgatttggatgacttggtttttact
catggaggtcactttatggcaaacaagaaatgcacgctaccagatggctcatttagaaag
acacgtaaaggttatgaggaagttcatgttccagcactcaaacctaagccctttagtggt
gatgaagcactaatgaagatagatgatcttccagaatggtgtcgaccagcatttggaaac
tatactagtctgaacagaatacagagccgacttgcagacacagctttaggaacagatgaa
aacctgttgttatgtgcacccacgggtgctggtaaaactaatgttgctctacttaccatt
cttcgtgaaattggaaagcatttgaatgaggatggaagtgttcagctggatgattttaaa
gtcatttatgttgctcctatgcggtctctggtacaggaaatggttggaaacttttctaaa
tgtttagggccatttggagtaaaggtaaatgaacttacgggagaccatcaactcaatcgt
gagcaaattgcagaaacgcaagttattgtttgtactccagagaagtgggacattattaca
aggaagagtggagacaggacatatgctcagttggttggacttgtcatcatagatgagatc
catttacttcatgatgatcgtggtccagttcttgagtgcattgttgctcgcactcttcgt
catgtagaggcaactcaggaaccagttcgtcttgttggtctttctgccacgctgcctaac
tttgaagacgttgccacattccttcgtgttgatccttccaaaggccttttcttctttgac
aacagcttccgtcctgtagcactagagcagacgtatgtgggaattacagaaaagaaggca
ttgaagcgattccaggtcatgaatgaagttgtgtatgaaaaagttatcgatcatgctgga
aaaaatcaggtgttggtttttgtgcattctcgaaaggagacagcaaaaactgctcgagca
attcgtgacatgtgcctcgatagagacacaattggtcactttcttcgtgaagactctgct
agtgctgaggtgttgcgctcagaagcagaacagaccaagaatcaagagctgaaagacctt
ttgccgtatggttttgctattcatcatgctggcatgacaagagttgatcgaacgctagtg
gaggatttgtttgctgatcgtcatattcaggtgttggtctctacggcaactctggcatgg
ggtgtgaacctacctgcccacacagttactattaaaggcactcaagtctacagccctgag
aagggcagatgggtggagttaggagctcttgatgtgctacagatgtttggacgggctggt
cgtcctcagtatgatagtcgcggcgaaggcattctgattaccagtcactctgagttgcaa
tattatctttctttgctaaaccaacagcttcccatagagagtcagtttgtcaaacggctg
gctgataatttgaatgctgaaatcgttctgggcactgtccaaaatgtaaaagaagcggct
ctgtggcttggttacacttacctatacattagaatgttgaggtctccaacgatgtatgga
gtatcatatgatgagttggaatcagatcctttgctggagcagcgacgtgtggatctcatt
cacacagcagctgctctcttagacaaacacagcatgataaaatacgacaagaagactggt
aatttccaggtcacagaacttggtcgcattgccagtcacttctattgtacccatgagacc
atggctacctacaatagtctactgaaaccaacgttgagtcagatcgaactttttcgtgtc
ttttcactctcatctgagttcaagtacattactgttcgtgaagaggaaaaactagaattg
tctaagctgttagaaagagtgccgattccagttaaagaaagcattgaagaaccaagtgca
aaagtgaatgttctcttacaagcatatatttcacaattgaaacttgaagggtttgcactt
gtagctgatatggtatatgtcactcagtctgctggtcgattgcttcgtgctatttatgaa
attgttttacatcgaagttgggctcagctgaccgatcgaactctgtctctttgcaagatg
gtcaacaaacggatgtggtcatcaatgagtccattacgtcagttcaagagaatgccaatg
gaagttgtgataaggttggagaagaaagaagaatttgcttgggaaaggttgtatgatctc
aatcatacagagattggagagctgattaaaaatccaaaaatgggcaagacaattcacaga
tttgtacatcagtttccaaaactggaattgaccactcacatacagccgatatcgagatca
tctctaaaagttgaactgactgttactcccgacttccagtgggacgagaaagtgcatggt
cattcacaaggcttttggatcttcgtggaagacgttgatagcgaagtgactttacatcat
gagttctttttgctgaagagcaagtatgccacagatgagcatactcttgagttcttcgtt
cctgtttttgatcccctaccgccacagtatttcattcgtgttgtatctgactcgtggatt
ggttctgaaacacagttgcctgtgtcatttcgacatctcatcttgccagagaagaatcct
ccaccaacagagttgcttgatcttcaaccactacccatgagtgcgctacgcaatgagaca
tacgagtctctctacaatgaacgtttccaattctttaacccaatacaaacgcaagtgttc
aacatgctctacaatggggatgagaatatgctaattggagctcctactggaagtggcaaa
actctttgcgccgagcttgccatcatgaggctttttaatgagatgcctgaaggtcgctgt
gtgtatgtgactccattacaggaactggctgaagaggtgtattctgattgggaggtaaag
tttggtcgtcatcttggcaagcgagtagtcttgctgactggagagacaagtgctgacttg
aagctaattgccagaggcaatgtgattgttgggactcctgacaaatgggacattttgtca
agacgttggaagcaaagaaaaaatgttcaaaatgttaatctttttgttgtcgatgaatgt
catcttatcggtggtgctgatggcccggttattgaagttgtgtgttcacggatgaggtac
attgcttcacagatagagaagcaaatcagaattgtggctctcacttctccgcttgcgaat
gcaaaggatgtagctcagtggctgggtgctggaactcacaacacttttaattttcaccca
aatgtgcggccagttccactagaacttcacattcagggtttcaatgtgagtcatgctgcg
tctcggcttatggccatggcaaagcctatctaccatgccatttgcaagcattcgcctcaa
aaacctgtaattgtctttgttccttctcgtaaacaggcacgtctcactgccattgatttg
ctgacatttgctggtgcagagcgtcagcctcaaagatttctacattgcccagaaagtgca
ttgactgaccatctccatctgattaaagacaagactctacgagagatgattgtaaatggc
gtggtgtatgcacatgaaggtttgagtgatacagaactacaagttgtccgacagatattt
aattctggagctgctcaggtggtgattgtttcgaaaggcttgtgttgggcactgggtatg
tcttcacatctagttgttgtgatggacactcaggaatacgatggctgtgggcacaggtat
gttgactaccctatcaccgatttactcaggatgataggatatgcaggcaggcctatccat
gatgatgatggcaaatgtgttgttatgtgtcagagctcaaagaaggatgtcttcaagaag
ttcctgtttgagcctcttccagttgagtctcacttggatcactacttgcacgatcatttt
aatgctgaaatcgtgacaaagacagtcgagaacaaacaggatgctgtggattatctcaca
tggacactaatttacagacgaatgacacaaaacccaaactactacaatcttcaaggggtg
acacatcgccacttgtctgaccatatgtccgaacttgtggagaacactttggctgatctc
cagcaatctaaatgcatcgcgattgaggatgatattgatgttcagcctctcaacttgggc
atgattgctgcatattattgcatcaactatacaaccattgaacttttcagtatgtcactt
aatgaaaaaactaagatgaagggtttgattgagattatcgcatctgcctctgaatatgag
acaatcccgctgcgtcatcatgaagcagccatcttaaaacagctgtcgtcaagagttcca
ttgaaactgccgagtgctagcaagttcaacgatccccatgtcaaggcaaacttgctgctg
caagctcacatgtctcgtatgcagctgtcggcagaactgcagcaagatacagaaaagatt
cttgcaaaggctcttcgactgatccaagcatgtgtagatgtcctcagcagtaatggttgg
ctcaaccctgcgatgcaagcaatggaattggcacagatggttactcaagcaatgtggagc
aaagattcacatcttaaacagctgccgcacttttcggctgacgttatcaagagatgtcaa
cagaagagcatcgaaactgtgttcgatgtgatggacatggaggatgatagtcgtaccgag
ctgctccaaattagcgattctcaaatgcaggatgttgctcgattttgtaatcactatcca
aacattgagttgaactatgaagttctggaaaaagatgaaattacaagtggttctgctgtg
gttgtggaagtgtctttggaaagagaagacgaagttgctggtccagtcatagctccattt
ttcccacagaaacgggaagagggctggtgggttgtcattggagaagcactcaccaacagt
ttgatctccatcaagcgagttgtgttgcaacagaaggcaactgtgaatctcgattttatg
gctcctgctattggtcaacataattatatgctctactttatgtgtgattcatatatggga
tgtgaccaagaatactctttctcaatcgacgtgaaggaaggagaagacagtgactctgat
gaggcgtga
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integrated database retrieval system
