Corticium candelabrum: 134179289
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Entry
134179289 CDS
T11492
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cclm Corticium candelabrum
Pathway
cclm03013
Nucleocytoplasmic transport
cclm03015
mRNA surveillance pathway
cclm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134179289
09122 Translation
03013 Nucleocytoplasmic transport
134179289
03015 mRNA surveillance pathway
134179289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclm03019
]
134179289
03041 Spliceosome [BR:
cclm03041
]
134179289
03009 Ribosome biogenesis [BR:
cclm03009
]
134179289
03012 Translation factors [BR:
cclm03012
]
134179289
Enzymes [BR:
cclm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134179289
Messenger RNA biogenesis [BR:
cclm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
134179289
mRNA cycle factors
Stress granule specific factors
134179289
Spliceosome [BR:
cclm03041
]
Complex C
Other components
EJC/TREX
134179289
Ribosome biogenesis [BR:
cclm03009
]
Eukaryotic type
90S particles
Helicases
134179289
Translation factors [BR:
cclm03012
]
Eukaryotic type
Initiation factors
eIF-4
134179289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
Cas3-like_C_2
NAT10_TcmA_helicase
AAA
Motif
Other DBs
NCBI-GeneID:
134179289
NCBI-ProteinID:
XP_062502137
LinkDB
All DBs
Position
5:198700..204363
Genome browser
AA seq
402 aa
AA seq
DB search
MSAGRRRTGLGDDDDTLKFETSDEVYVIPTFDAMGLREELLRGIYAYGFERPSAIQQRAL
KSIIQGRDVIAQAQSGTGKTATFSIAMLQAVDMQLRETQALVLSPTRELATQIQKVVLAL
GDYMSVQCHSCIGGTNVGEDIRKLDYGQHIVSGTPGRVFDMIKRRNLRTRSIKVLVIDEA
DEMLDKGFKEQIYDVYRYLPPGTQVVLVSATLPKDVLTMTSKFMTDPIRILVKRDELTLE
GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSAMHG
DMPQKERDAIMKEFRSGASRVLISTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSG
RYGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccggtcgacgtcgtacgggattgggagacgatgacgatacgctcaagttcgaa
acaagcgacgaagtttacgtcattccgacgttcgacgcgatgggactgcgcgaagaactc
ctgcgagggatctacgcatatggcttcgaacgaccatcagccatccaacaacgagcacta
aaatcaataattcaaggaagagacgtgatcgcacaggcacagtctggaactggcaagacg
gcgacgttttctatcgccatgctgcaggctgttgacatgcaactgagggaaacacaagcg
ctcgtattgtcgcccacaagagagctggcgactcaaatacaaaaggttgtgttggctctg
ggtgattacatgagtgttcagtgtcactcctgcattggtggtacgaatgttggtgaggac
atcagaaagttggattacggacagcacatcgtgtcgggaactccaggaagagtgttcgac
atgataaaacgacggaatcttcgaactcgctccatcaaggtcttagtcattgacgaagca
gatgaaatgcttgacaaaggtttcaaagaacaaatctatgacgtctacagatacttgcct
ccagggacacaggtagttttggttagtgctacattgccgaaagatgtcttgactatgacg
tcgaagtttatgactgatcctattagaattcttgtcaaacgtgatgagttgacattggag
ggaatcaaacagttttttgtggctgtggaacgtgaagagtggaagtttgacactctatgt
gatctatatgacacactgaccatcacacaggctgtcatcttttgtaatacaaagagaaag
gtcgactggttgacagagaaaatgcgcgaggcaaatttcactgtatccgcaatgcacggc
gacatgccacagaaagagagagatgccattatgaaggaatttcgctcaggagcgagtcgt
gtattgatatcaactgatgtttgggctcgtggtttggacgtgcaacaagtatcacttgtt
atcaactacgacctgccaaacaatcgtgagctctacattcacaggattggtcgtagtggt
cgatatggtcggaagggagttgctatcaattttgtgaagagcgacgacattcgtattctt
agagacattgaacagtactacagcacacagattgacgagatgcccatgaacgttgctgat
ctcatttga
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