Corticium candelabrum: 134182258
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Entry
134182258 CDS
T11492
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cclm Corticium candelabrum
Pathway
cclm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134182258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclm03019
]
134182258
Enzymes [BR:
cclm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
134182258
Messenger RNA biogenesis [BR:
cclm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
134182258
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
134182258
NCBI-ProteinID:
XP_062505633
LinkDB
All DBs
Position
1:16370379..16378284
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AA seq
526 aa
AA seq
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MCEVTKENFSSLLPEIRELVDEAKFIAIDAEFTGISLQTSNNFSLRDGGSSRYGKLKAIA
KEFSLCQIGLSIFVKEKDENQFIAHTYTFYLFPDHTGSEDVRFGIQVSSLSFLRQHGFNF
NKWIQNGIGYLNNQQEKALREASLESSDDAIVQKFREIVGWLRNAKCGDQLQLEAKHFSF
TVRMQSIMDKLLPPNKVVLKDISGLLYAKCLDPIDDSTVLPDDISVASWDQIVDEMVGFT
HVVRHLCQSGKPIVGHNVLLDLLFICDKFICDLPDSYEEFKATVHAALPIVYDTKQLCYE
MKQFVARGDRELLAFSSLADLFFSLSSARALQSRLMAPAVVHCTKSSIYDGHRHWHEAGF
DAYMTGCVFVRVLSFALTSGFRVDEVQKAKFSRLLQLASPYKNRLRIPRSAILYCNLEGL
DKSRCLYYLHVSPRQGVSDSAFSQLAQLLSGFGAVESHQLDRQRALVVAGSKKCGDMLLQ
DFEGSDVFIMRPYWFFDSPFVRSAARWICVVGVILLASGYKYVKLR
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgaagttacaaaggagaacttttcgtctttgcttccggaaatcagagagctagta
gacgaagctaagttcatagcaatcgatgcagaatttaccggcatttctctccagacatcc
aacaactttagtttacgtgatggcgggtcttcgcgctacggaaagttgaaagccattgca
aaggaattcagtttgtgtcaaattggcttgtcaatatttgtcaaagaaaaagatgagaac
caattcattgctcatacttatacattctacttattccctgatcatacaggctcagaagat
gttcgatttggtattcaagtttccagtctgtcatttcttagacagcacggcttcaatttt
aacaagtggattcaaaatggaattggttacttgaataatcagcaagagaaagcacttcga
gaagcgtcattggaaagcagtgatgatgcaatagtacaaaagtttcgtgagattgtgggg
tggttgagaaatgcgaagtgtggtgatcaattgcagttggaagcaaaacactttagtttt
acggtacggatgcagtctattatggataagttacttccacctaacaaagtcgttcttaaa
gacatatctggtctactttatgctaagtgtctggatcctattgatgactcgactgtgttg
ccagatgatatttctgttgcttcatgggatcaaattgttgatgagatggttggctttaca
catgtggtaaggcacttgtgtcagtctggcaagccaattgttggtcacaatgtccttcta
gatctactcttcatatgtgacaagtttatctgtgacttaccagattcttatgaggagttc
aaagcaactgtgcatgctgctttaccaattgtatatgatacaaaacagctgtgttatgaa
atgaaacagtttgtagcacggggtgatcgtgaacttcttgcatttagttcattagccgat
ctcttcttttctctcagcagtgcaagagcattgcagtcacgtttgatggcacctgcagtt
gtgcactgcacaaagtcttctatttatgatgggcatcgacattggcatgaagcaggattt
gatgcttatatgactggctgtgtttttgttcgtgttctcagttttgcattgacatcaggt
ttcagagttgatgaagtccagaaagcaaagttttcacgattgttgcagttggctagtcca
tacaagaatcgattacggattccaagatcggctatattgtattgtaatcttgagggactt
gacaaaagtcgttgtttatattatcttcatgttagtccacgtcaaggagttagtgattct
gctttttctcagcttgctcagcttctgtcaggctttggtgcagttgaatcacatcagttg
gacagacagcgagctctagttgttgcaggcagtaagaaatgtggagacatgcttctacag
gattttgaaggcagtgacgtgtttattatgcgtccatactggttctttgattctcctttt
gttcggtcagcagctcgctggatttgtgttgtgggtgtcattctgcttgctagtggttac
aaatacgtgaaactgagataa
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