KEGG   Corticium candelabrum: 134184121
Entry
134184121         CDS       T11492                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
cclm  Corticium candelabrum
Pathway
cclm03013  Nucleocytoplasmic transport
cclm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cclm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    134184121
  09122 Translation
   03013 Nucleocytoplasmic transport
    134184121
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclm03019]
    134184121
   03041 Spliceosome [BR:cclm03041]
    134184121
Messenger RNA biogenesis [BR:cclm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     134184121
Spliceosome [BR:cclm03041]
 Complex C
  Other components
   EJC/TREX
    134184121
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    134184121
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_WDR3_1st Beta-prop_WDR5 WD40 Beta-prop_EML_2 WD40_Prp19 WDR55 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 WD40_Gbeta Beta-prop_RIG_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_NUP159_NUP214 Beta-prop_TEP1_C TRM82_WD Beta-prop_WDR35_TULP_N Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st DSE1_N WDR90_beta-prop_4th RING_Ste5 HPS6 PCYCGC Beta-prop_DCAF12 PAC11
Other DBs
NCBI-GeneID: 134184121
NCBI-ProteinID: XP_062507722
LinkDB
Position
9:complement(join(3105067..3105156,3105225..3105316,3105377..3105500,3105571..3105666,3105720..3105806,3106520..3106576))
AA seq 181 aa
MSIEVDINTHVILSHDTNYSKHSHFLAETKLYFQKNNKTRDFQAHESKAHSVGWSCDGRK
LASGSTDKTVSVFSLDKHNLSRIFNYKGHTDHVDQLSWHPSHPDCLVLASEDKTVRVWDS
RTPKCAQCIITKGDNINICWSPDSNTIAVGNKEDLITWIDRVIREHTRCEPRCNLAMRWM
L
NT seq 546 nt   +upstreamnt  +downstreamnt
atgtctattgaggtcgatatcaacactcacgtgatattgtcacatgacacaaattactca
aagcacagtcatttcctagctgagacgaagctttattttcaaaagaacaacaaaactaga
gattttcaagctcacgagtcaaaggcgcattctgtgggatggagttgtgacggtcgtaaa
ttagcgtctggatctacagataagactgtcagcgttttttctcttgacaaacataatttg
tctcggatatttaactacaaaggtcacactgatcatgtcgatcagctttcatggcatccc
agtcatcctgattgcttagttttggcgtctgaagacaagacagttcgagtgtgggactcg
agaaccccaaagtgtgcacagtgtatcatcacaaaaggtgataacatcaacatctgttgg
agtccagacagcaatactattgcagtgggaaataaggaagacttgattacctggattgat
agagtgatacgagaacatacaagatgtgagccgagatgcaatttagctatgaggtggatg
ttgtga

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