KEGG   Corticium candelabrum: 134184520
Entry
134184520         CDS       T11492                                 
Name
(RefSeq) DNA ligase 1-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cclm  Corticium candelabrum
Pathway
cclm03030  DNA replication
cclm03410  Base excision repair
cclm03420  Nucleotide excision repair
cclm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cclm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    134184520
   03410 Base excision repair
    134184520
   03420 Nucleotide excision repair
    134184520
   03430 Mismatch repair
    134184520
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cclm03032]
    134184520
   03400 DNA repair and recombination proteins [BR:cclm03400]
    134184520
Enzymes [BR:cclm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     134184520
    6.5.1.6  DNA ligase (ATP or NAD+)
     134184520
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     134184520
DNA replication proteins [BR:cclm03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    134184520
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     134184520
DNA repair and recombination proteins [BR:cclm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     134184520
   NER (nucleotide excision repair)
    Other NER factors
     134184520
   MMR (mismatch excision repair)
    Other MMR factors
     134184520
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 134184520
NCBI-ProteinID: XP_062508214
LinkDB
Position
9:join(4070832..4070851,4070906..4071186,4072998..4073123,4073191..4073251,4073761..4073850,4075073..4075129,4076708..4076804,4077117..4077257,4080116..4080217,4080283..4080514,4080566..4080665,4082763..4082964,4083590..4083685,4083751..4083861,4084991..4085062,4085125..4085193,4085256..4085331,4086039..4086121,4086184..4086336,4086423..4086557,4086610..4086672,4086739..4086831,4086962..4087054)
AA seq 850 aa
MTQARISSFFAGVSTAASQRKTQPQILSKVNEDVDLDEMASAKKRTSKRVFQEDGEEEED
MSRMKEAKLQETVETTENESMEIVAESGLKEDLINGTKTEGEALDVGQNKEIEVSDKKQA
EKAVHPFFGKRRCKAVEQSSSQTMADSKVTDGDQDVCKMVTDSSDDHVDPVQYTPDKFSY
HPVKDACWQCRQQLPYLAICRTFEAIEATSGRHKIISLLCNLFRSVIALSPDELLPCVYL
CLNQLAPAYEGLELGVGETILVKAIAEVTGRSAKSVKAEIAKKGDLGIVAEASRTNQRMM
FTPPKLTTSSVLKKLKEIAQLTGSASMSKKLSHIKSMLVACRHSEARYLMRWSVLLTFDC
NSVSSRFDYFRRSLTGKLRIGLAEQSVLTALGHAVVLTPPASELPLTVVDASKGVAAEKF
KEELDRGALTVKSVYCELPCYDKIIPTLLAQGLKALPEECKLTPGIPLKPMLAHPTKGVA
EVFKRFEDAAFVCEYKYDGERAQIHILEDGDIKIYSRNQENNTSKYPDVISRIPKVLRPG
VTSCIIDSESVAWDRDKTQILPFQVLSTRKRKDADVSLIKVQVCVFAFDLLYLNGQSLVK
EPLERRRELLHSSFNEIEGEFMFTKSLVSAGTDDIASFLDQSIKDSCEGLMVKTLATDAT
YEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGGYHGTGKRTGCYGGFLLACYDNESEQFQS
ICKIGTGFSDEDLTKHTQFLNSHVIPQPKPYYAFGSSVTADVWFDSIQVWEIKAADLSLS
PTHKAAIGIVDSDKGVSLRFPRFVRIRDDKKPEEATSAEQVAIMYRSQELVRNTSAAGDS
KMEGGGEDFY
NT seq 2553 nt   +upstreamnt  +downstreamnt
atgacgcaggcaagaatctcatcgtttttcgctggggtgtcgactgcagcgtctcagagg
aaaacacaacctcagattttgtcaaaagtgaacgaagatgtggatctagatgagatggcg
tcagctaagaaacgcacaagtaaacgcgtatttcaagaagatggtgaggaggaggaggat
atgtcccggatgaaggaggcaaaactacaggaaactgtggaaacgacggaaaatgaatca
atggagatagttgccgagagtggactgaaggaggatctgattaatggtacgaaaacagaa
ggtgaggcgcttgatgttgggcagaataaagaaatagaggtgagtgacaagaagcaagca
gaaaaagctgttcatccattttttggaaagcgaagatgtaaagcagttgaacagtcaagc
tcacaaacgatggcagacagcaaagtcacggatggtgatcaagatgtttgcaagatggtg
acagacagctctgatgatcatgttgatccagttcaatatacacctgacaaattttcatat
cacccagtgaaagatgcatgctggcaatgcaggcaacagttgccgtatttggcgatttgc
agaacgtttgaagcaattgaagctacatctggcaggcataagattatatcactgctgtgc
aacctgtttcgctcggtgattgccttgtctccagacgaattgctaccatgtgtttattta
tgcctcaaccaattggctccagcttatgagggactagagctaggagttggcgaaactatc
ctagtaaaggcaatagccgaagtcaccggtcgcagtgcaaagtcagtcaaagcagagatc
gcaaagaagggcgacctgggaatagtggcagaggccagtcgaacaaaccaacgaatgatg
ttcacgccacctaaactgaccacttccagcgtcttaaagaaactgaaggagattgcccag
ttaacagggagcgcttcgatgtcaaagaaactgagtcacatcaaatcgatgctcgtagca
tgtcgacactcagaagcaagatatctcatgaggtggtccgtcttactcacatttgactgc
aacagcgtgtcatccagatttgactattttcgtagatctttaactggaaagttgagaata
ggtctcgctgagcagtcagtattgacagctttggggcatgcagtggtgttaacacctcca
gcttcagagttgcctcttaccgttgtggatgccagcaaaggtgttgctgctgagaaattc
aaggaagaactggatcgtggggcattgactgtgaaatcagtgtactgtgaattgccttgt
tatgacaaaatcattcccactttacttgcacaaggcctaaaggcactaccagaggagtgc
aagctaacaccgggcattcctctcaaacctatgctcgcccatccaaccaaaggtgtagcg
gaagttttcaaacgatttgaggatgcagcctttgtgtgtgaatacaaatatgatggagaa
agagcccagatacatattttagaagatggagatattaaaatctacagcagaaaccaagaa
aacaacacttccaagtatcctgacgttatatccaggataccaaaggtgttgagaccagga
gtcacttcctgtatcattgattcagagtcagttgcctgggacagagacaaaacacagata
ctgccctttcaagtgctaagcactcggaagaggaaggatgctgatgtttcactaatcaaa
gtccaagtttgtgtattcgcgtttgacttgctgtatctcaatgggcagtctcttgtgaag
gagccgttggaaagaagaagagagctccttcactcatcgttcaatgagatagaaggcgag
ttcatgtttaccaaaagtcttgtttcagccggtactgatgacattgcttcattccttgac
cagtccatcaaagacagctgtgagggtttgatggtgaaaacactagcaactgatgcaaca
tacgagattgccaagagatctcacaactggttgaagttgaagaaagactacttggaaggg
gtaggtgatactctggatcttgtggtgataggtggctaccatggtacaggcaagcggact
ggatgttatggaggattcttactagcgtgctatgacaatgaaagtgaacaattccaaagt
atttgcaagatcggtacaggcttctcagatgaagatctaacaaagcacactcaattcttg
aacagccatgtcattccccagccaaagccatactacgcatttggctccagtgtgactgcg
gatgtatggtttgactcaatccaggtgtgggaaatcaaggcagccgacctgagtttgtcg
cccacgcacaaagcagcaatagggattgttgactctgacaaaggcgtctctttgaggttt
cctcgcttcgttcgcatccgagacgacaagaagccagaggaggcgacaagcgccgaacag
gttgccatcatgtatcgcagccaagaactggtgaggaacaccagcgcggcaggcgacagc
aagatggaaggcggcggcgaggatttctactag

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