KEGG   Corticium candelabrum: 134185495
Entry
134185495         CDS       T11492                                 
Name
(RefSeq) exosome RNA helicase MTR4-like
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
cclm  Corticium candelabrum
Pathway
cclm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cclm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    134185495
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclm03019]
    134185495
   03041 Spliceosome [BR:cclm03041]
    134185495
   03009 Ribosome biogenesis [BR:cclm03009]
    134185495
   03016 Transfer RNA biogenesis [BR:cclm03016]
    134185495
Enzymes [BR:cclm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     134185495
Messenger RNA biogenesis [BR:cclm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     134185495
Spliceosome [BR:cclm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    134185495
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    134185495
Ribosome biogenesis [BR:cclm03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    134185495
Transfer RNA biogenesis [BR:cclm03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    134185495
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk DEXQc_Suv3 ResIII Helicase_C nSTAND3
Other DBs
NCBI-GeneID: 134185495
NCBI-ProteinID: XP_062509279
LinkDB
Position
10:complement(join(8485199..8485251,8485317..8485421,8485485..8485530,8485661..8485834,8485905..8486010,8486188..8486253,8487139..8487332,8487418..8487510,8487584..8487694,8490302..8490415,8490520..8490761,8490820..8490970,8492728..8492955,8494780..8494890,8494952..8495031,8495956..8496087,8496218..8496314,8496397..8496495,8496567..8496691,8497547..8497637,8497710..8497884,8498589..8498701,8498774..8498836,8502249..8502339,8502398..8502582))
AA seq 1014 aa
MATFDSSLFRVFEETELQERKRAKVDVGDNDNETIESEYDGAPIEELEVADDDGELKLQD
NECRSSAECEMRNASAKPRVFSVETIEVCTHEVAVPPESEYKPLSTISGKPAKEYPFILD
PFQKEALKCLENNQSVLVSAHTSAGKTVVAEYAIAVSLRDRQRVIYTTPIKALSNQKYRD
LNEEFRDVGLMTGDVTINPSASCIVMTTEILRSMLYRGSEVMREVGWVVFDECHYMRDKE
RGVVWEETIILLPDNVHYVFLSATIPNARQFAEWVCFLHKQPVHVVYTDMRPVPLQHYIY
PAGADGLYLVVDEKGEFREDNFQTAMTLVKDGDGGKDKTVRRGGTKGPSNCYKVVKMIME
RNLQPVIVFSFSKRECEAYALQMSKLDFNTDDEKSLVEEVFANAVDALSDEDKHLPQVEH
VLPLLKRGVGIHHSGLLPILKEVIEILFGEGLIKALFATETFSLGLNMPARTVVFTNPRK
FDGKSFRWVTGGEYIQMSGRAGRRGIDERGIVMLMVDERMEPPVGKALLKGHSDPLNSAF
HLTYDMVLNLLRVEEINPEYMLERSFYQWQHEAAIPSLEEKLHLLEHEQTAIVINDEKQA
MAYYRIRQQLEKLKKELHAYITRPKYCLPFLQPGRLVRVVDGDCDFGWGCVVNFQKKSLK
KGENSHYIAEVLLYVVSEHDPMMGKIPKPAYSGDQGEMQVVPVSLSLLTALSTVRLYIPK
DLRPKDARQTVFKSIQEVKRRFSGNLPLLDPVEDMNIKDNGFRKTVRKIESLEDRMFNHP
LHDSQDLPSVYQLCQRKSQLIAEIKLVKAEIKRTRSVLMLDQLKCRKRVLRRLGYATAAD
VIELKGRVACEISSGDCLVLGEMIFNGTFNDLPVEQSVALLSCFVFEETDEMKSRLSEEL
AAPLRVMRDTARRIARVCIEAKMDVDEEQYVQSFKTGLMDVVYAWAKGSTFAQLCKMTEV
FEGSIIRCMRRIEELLRDLCQASKAIGNTELENKFAEGITKIKRDIAFAASLYL
NT seq 3045 nt   +upstreamnt  +downstreamnt
atggccacgtttgactcgtctttatttagggtgtttgaagagacagagttgcaagaaagg
aaaagagctaaagtagatgttggagataatgacaacgagacaatcgaaagtgaatatgat
ggagcccctatagaggagcttgaagttgcggatgatgacggagagttgaagttgcaggac
aacgaatgtcgtagttctgcggagtgcgaaatgaggaatgcgagtgcaaaaccaagagtt
ttttcagtggagacaatagaagtctgtacacacgaggtagctgtgcctccagagtcagaa
tacaagcctcttagcacaattagtggaaagcctgccaaggagtatccatttattttggat
cctttccagaaggaggctttgaagtgccttgaaaacaaccagtcagtattggtgtccgca
cacacatcagctggcaagacagtagtggcagaatatgcaatagctgtgtctcttcgtgat
cgtcaacgtgtcatttacacaacacccatcaaggctttgagcaatcagaaatatcgtgac
ttaaatgaagagtttagagatgttggtctgatgactggtgatgtgactatcaacccttct
gctagttgtattgtcatgacaacagaaatcctaagaagtatgttataccgaggatcagaa
gttatgagagaagtaggatgggttgtgtttgatgaatgtcactacatgagagataaagaa
cgtggggtagtgtgggaagagaccatcattcttcttccagataatgttcattatgtgttc
ttatcagcaacaataccaaatgcaaggcagtttgcagaatgggtgtgcttccttcacaag
cagcctgtgcatgttgtttatactgacatgcgtcccgttccactacaacattacatctac
ccagctggtgcagatggtctctatcttgttgttgatgaaaagggagagtttagagaagac
aattttcagacggcaatgacattagtgaaagatggagacggtggaaaggacaaaacagta
agacgtggaggcacaaaaggtccatctaattgctataaggttgtgaagatgattatggag
aggaacctgcagccagtcatagtcttcagttttagtaaaagagagtgcgaggcgtacgct
ttgcaaatgtcaaagttagacttcaacacagatgatgagaagtctctagtggaggaagtc
tttgctaatgctgttgatgctctttcagatgaagacaagcatctcccacaggtggagcat
gttttgcctttgttaaaaagaggagtgggcatacatcattctggtttactaccaatactc
aaggaagtgatcgaaattttgtttggagaaggtcttataaaggcactttttgccactgaa
acattttctcttggtctcaacatgcctgctcgaactgttgtgttcacaaatcctaggaag
tttgatggcaaatcctttcgctgggtaactggaggtgaatatattcaaatgagcggtcgt
gctggtcggagaggaattgatgaacgtggaattgtgatgctgatggtggatgaaaggatg
gaaccacctgtaggaaaagctcttcttaagggccactctgatcctctcaacagtgcattc
cacttaacttacgatatggtgttgaacctgttgagagtagaagaaatcaatccagaatat
atgttggagagatctttctaccaatggcagcacgaggctgcaataccatcattggaagaa
aagctgcatttgcttgaacatgagcaaactgctattgttattaatgatgaaaaacaggca
atggcttattatcgaatcaggcaacaattggagaaactgaagaaggagttgcatgcttat
atcactcgacctaaatactgtttaccttttctacaaccaggaagacttgtgagggttgtg
gatggtgactgtgactttggttggggatgtgttgtcaacttccagaagaagtcactgaag
aagggagagaacagtcactatattgctgaagtattactgtatgttgtcagtgaacatgat
cccatgatggggaagattcctaaaccagcttattctggtgaccaaggagaaatgcaggta
gttcctgtgtctctttcactattgactgctttaagtacagtcagactgtacatccctaaa
gatttaaggccaaaagatgcaagacaaactgttttcaagtctatacaagaggtaaagcgt
cgtttctcaggcaacctccctcttcttgatccagtggaagacatgaatattaaggataat
gggtttaggaagacagtgaggaaaattgagtctctagaagatcgtatgttcaaccatccc
ttgcatgacagtcaagacttaccatctgtgtatcagctttgtcagagaaagtcacaactt
atcgctgaaataaaactggtcaaggctgaaatcaagagaacaagaagtgtgcttatgttg
gaccaactcaaatgcagaaagagggttttaaggagacttggctatgcaactgctgcagac
gttattgagctgaaaggcagggtagcatgtgaaatcagcagtggtgactgtttggtcttg
ggagagatgatttttaatggaacattcaatgaccttcctgtagagcaaagtgtcgctttg
ctgtcatgttttgtgtttgaggaaacggatgaaatgaagtcaagattgtctgaagaattg
gctgctcctcttcgtgtgatgagagacacagcaagacgaatagcgcgagtttgcattgaa
gcaaagatggatgttgatgaggagcaatatgtccaatcatttaaaacagggttaatggat
gtcgtgtatgcttgggcaaagggatcaacatttgctcagctgtgtaaaatgactgaagta
tttgaaggaagtattattcgatgtatgcgacgcattgaagaactgctaagagacttgtgt
caagcttctaaagctataggcaacacagagctagagaataagtttgctgaaggtataacc
aaaatcaagagagacattgcatttgcagcaagcctttatctgtga

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