Corticium candelabrum: 134190493
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Entry
134190493 CDS
T11492
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cclm Corticium candelabrum
Pathway
cclm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134190493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclm03019
]
134190493
03041 Spliceosome [BR:
cclm03041
]
134190493
Messenger RNA biogenesis [BR:
cclm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134190493
Spliceosome [BR:
cclm03041
]
Complex B
Other components
Prp19-related factors
134190493
Complex C
134190493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_19
Mad3_BUB1_I
TPR_2
CCDC84
ARM_TT21_C
DUF7041
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
134190493
NCBI-ProteinID:
XP_062514930
LinkDB
All DBs
Position
15:complement(3355970..3370074)
Genome browser
AA seq
869 aa
AA seq
DB search
MPVAKKAVFSSFAVAESDVPFEEDILRNPYSVKAWQRLINHKLQCKAPKPAINIVYERAV
RELPGSYKLWYNYLKLRRTQLRRKCITDPIFEEVNNAFERALVFLNKMPRIWLDYCQFLI
DQKKITRTRHTFDRALAALPITQHSRIWPLYLKFVRSQPIQETAIAVYRRYLKVMPEDAE
MYIDYLKSIDKLDEAARRLADLVNQQDFVSKNGKSNHQLWHELCDLISQNPDKVKSMPVE
AIIRGGLRRFTDQLGQLWCSLADYFIRSAHFEKARDIYEEAIQTVTTVRDFGQVFDAYAQ
FEESMISARMETIAEMGATEEEDLDLELRLARFEHLMDRRPLLLNSVLLRQNPHNVHEWH
KRVQLYEGKPKDIISTYTEAVQTVNIKVATGRPHTLWVAFSRFYEDNGQLPEARIIMEKA
VKVPYKNVDDLATVWCEYCEMEMRHENFNRSLQVIQRATAMPAKKAAYYDDSEVVQNRVF
RSLKLWSMYADLEESLGTFQSTKSVYQRILDLRIATPQLIMNYAIFLEEHNYFEEAFKAY
ERGIAMFRWPHVYDIWNTYLTKFINRYGGQKLERIRDLFEQCLTDCPAKFTKSLYLLYAK
VEEEHGLARHAMAVYERATTAVEPDEQFEMYNIYIKRASDAFGVVYTRQIYEKAIEQLKD
DHAIEICLRYAELEKKLGEIDRARALYSFCSQMCDPRTKPSFWETWHGFEVKHGNEDTFR
EMLRIKRSIQAQFNTQVNFMSAQMMAGGGQGAATGTTIGGVNEDLDEMAELERKARQMAE
EAEKDQPRLKRDVLFVRGDESTQEMDEMVKAANPDEIVIGDEDEEEEEATVEEVQLEKKM
VPSAVFQGLVDDEGKPSVGARERLSKRKK
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtagcaaagaaagcggttttctcgtcgtttgctgtcgcggaatcggatgtaccg
tttgaagaagacattctacgcaatccgtactctgtcaaagcctggcaacgcctcataaac
cacaaactgcaatgcaaggctcccaagccagccatcaatattgtctacgaacgagcagta
cgagaattgccgggcagctacaagttgtggtataattacctcaagctgagaagaacacag
ttacgaagaaaatgtatcacagatcccatctttgaagaagtaaacaatgcatttgagaga
gctctggtgtttctaaacaagatgcctcgcatttggcttgattattgtcaatttttgatc
gaccagaagaagataacacgaacgcgtcatacgtttgatcgagctttggctgcccttccc
atcactcaacattctcgcatctggcctctctatttgaagtttgttcgttctcaaccgatt
caagaaacagccattgcagtttacagaagatacttaaaggttatgcctgaagatgcagaa
atgtatatcgactacctgaaatcgattgacaaactggacgaagcagcaagacggctagca
gacctcgttaaccagcaagattttgtatctaaaaatggcaaatcgaatcatcagttgtgg
cacgagctttgtgatttgatttctcagaatccggacaaagtaaagagtatgcctgttgag
gctattattcgtggcggtcttcgtcggtttacagatcagcttggacagttgtggtgttca
cttgccgactacttcatcaggagtgcacattttgaaaaggccagagatatctatgaagag
gctattcaaacggttacaactgttcgagactttggtcaggtgtttgatgcatatgctcag
tttgaagagagtatgatcagtgccaggatggaaacgatagctgaaatgggagcaacagag
gaggaggatcttgatttggagctgagactggcacgatttgaacatctaatggacagaaga
ccacttttgttgaacagcgttttgttacgtcagaatcctcacaacgttcacgagtggcac
aaacgagtgcaactgtatgaaggaaaaccgaaagacataatcagcacctacacagaagct
gtacaaaccgttaatatcaaagttgctactgggaggcctcatactctgtgggtggctttc
tcgcggttttacgaagacaatgggcaacttcctgaagctcgtattatcatggaaaaggca
gtgaaagtgccgtataagaatgttgatgatctggcaacggtgtggtgtgagtattgtgag
atggagatgagacacgaaaacttcaatcgttctctacaagtgatccaacgagccactgca
atgccagcgaaaaaggccgcatactacgacgatagcgaggtcgtacaaaatcgtgtgttt
cgttctctgaaactctggtcaatgtatgccgatcttgaagagagtttgggaacatttcag
tcaacgaagtctgtctaccagcgcattttggatttgcgtattgccactccacaacttatt
atgaactatgctattttcctggaggaacacaattattttgaagaggcatttaaggcatat
gagaggggcatagcaatgtttcgatggcctcacgtgtacgacatctggaacacatatctc
accaagtttatcaacagatatggtggccagaagctggaacgtatacgtgatctattcgaa
caatgtctgacagactgtccagcaaaattcactaaatctctctatttgttatacgctaaa
gttgaggaagagcacggcttagctcggcatgccatggcagtgtacgaacgtgcaacaact
gccgtcgaaccagacgagcagtttgagatgtataatatttatatcaaacgtgcttcggat
gctttcggagtcgtctacactcgtcagatctacgaaaaagccatcgaacaattaaaagac
gaccatgccattgaaatctgcttgcgttatgctgagctcgagaagaagcttggtgagata
gatcgagccagagctctctactcgttctgttcccagatgtgtgatccgaggacgaaaccg
tcattctgggagacgtggcacggatttgaagtgaagcacggcaatgaggacacgttcaga
gagatgttgagaatcaaacgtagtattcaagcgcagttcaacactcaggtcaactttatg
tctgcccaaatgatggccggtggagggcaaggtgcagccactggaacaacgattggtggg
gtaaatgaggatcttgatgaaatggctgagcttgagagaaaagcaagacagatggcagag
gaagcagagaaagatcaaccgaggctaaagagagatgtgttgtttgtcagaggagacgag
tctacacaagagatggatgagatggtgaaagcagccaatcctgatgagattgtcattgga
gatgaagatgaggaggaggaagaggcgactgttgaagaagtccaactggagaagaaaatg
gtgccgtctgctgtttttcaaggtttggtcgatgatgaagggaagccgtctgtgggtgca
cgcgagagactgtccaaacggaagaaatga
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