Corticium candelabrum: 134190538
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Entry
134190538 CDS
T11492
Name
(RefSeq) superkiller complex protein 2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cclm Corticium candelabrum
Pathway
cclm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134190538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclm03019
]
134190538
Enzymes [BR:
cclm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134190538
Messenger RNA biogenesis [BR:
cclm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
134190538
mRNA degradation factors
3'-5' decay
Ski complex
134190538
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
ResIII
Act-Frag_cataly
Pox_TAP
Motif
Other DBs
NCBI-GeneID:
134190538
NCBI-ProteinID:
XP_062514975
LinkDB
All DBs
Position
15:364811..382913
Genome browser
AA seq
1268 aa
AA seq
DB search
MLQDQLEKAEKSDVKFDARLLGCSFRLVETGAAGGVQLVEGEYSRDTLDKPFSTLPCGMP
PVIGGDRKSSLERFLLQPEKLPIHDPKRSHKFWPREIDYTSLYHIDVTTSHTTLSVERDK
KTGKLLKYTEVNIPNPDSSAHTSTSLSRPPGLISDSIKGLSSNIPFWPGGLDEPDLSVSV
GAEAEDIDFENDLLTCPPGFAAGIEIEQKKKPAVIARQIVNVAQLNLDDVLAEEFTLDTL
APSDEENESEEDEREVVAANENLHRSESLENILPKISNETTTTKSQQTTKPNWVININTT
EPVNNFHKLIPHMAYEWPFELDIFQKQAILCLERGDCVFVAAHTSAGKTVVAEYAIALST
KHMTKTIYTSPIKALSNQKFRDFRMSFGDVGLVTGDVQIKPDAACLIMTTEILRSMLYNG
SDVIRDVEWVIFDEVHYINDTERGVVWEEVLIMLPDHVNIVLLSATVPNTYEFADWIGHT
KQKPIYVISTAKRPVPLEHYLYTGNSSKTCDELFLLVDADGRFLTKGYQRAVDAKKARET
KSSAGFGTKGPLHGGNFKQDKNIFLSLINKLKKDDRLPVVAFTFSRKRCDENASGLTTID
MTTSAEKSEITVFFSKSVARLKGTDKQLPQVLRLKELLARGIGVHHSGILPIMKEVIEML
FQRGLVKLLFATETFAMGVNMPARTVVFDSTRKHDGTALRNLLSGEYIQMAGRAGRRGLD
STGTVILLCKGDVPETSELHQMMLGRPTKLESKFRLTYSMILNLLRVEQLRVEDMMKRSF
AELDLQRDAQQASSQRQELEQQIKDFQEKTFPMCDDIEEYYFAASELNELKHSLQSQITN
SPQAAKLLSSGRIIVINNQHHNNTLAVLLQPSTSRSRLTTSVSDTSKSYTVLILCNEKQR
DVTSQQPTTHASHYTPSTPAVISGRTPLFCPDGPCGHVVVDVKPIEIAVITDRMLRVNAS
YIIDDYRKRQQTRFRDNPPGRECSIATQELLRLVETNPDGLEAIDPVKDLNMRDIDFIEK
FRRSQFLEQSLQTFQCVHSPHFVEAFEQTRRKQKMLESLNRLKFLLSDESLQLLPEYRQR
VEVLKRLAFIDVDTNVQLKGRVACEISNHELFITELVFENILRDLDPTEIVAILSCFVFQ
QKHTSEPQLTETLQNTKDQVIDLATRLAGVQMECDLQITVEEFVGELHFGLVEAVYEWAR
GMPFSEITNLTDVQEGIIVRCIQRLDEVCRDVRTIARMVGDPVLYEKMDQGSSLIKRDIV
FAASLYTQ
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgttacaagatcagctcgaaaaggctgaaaaatcggacgtgaaattcgatgctcgtctg
ttgggctgctctttccgtctcgttgagactggagcagcaggaggagtgcaactggtggaa
ggagaatactcacgtgacacactagacaagcctttctcgacgttgccatgtggtatgcct
cctgtcattggaggtgacagaaagtcatcactagaacgtttcttgcttcaacctgaaaag
cttcccatccacgacccaaagagatcacacaagttttggccacgagaaattgattacacg
tctctttatcatattgatgttacaacttcacacacaacattgtcagttgaacgagacaag
aagacaggaaaactgctaaaatacactgaggtgaacattcctaatccggacagcagtgct
cacacatcaacatcactatccagacctcctggcttgatatcagactctatcaagggattg
tcatccaacattccgttttggcctggtgggcttgatgaacctgatcttagtgtgtcagtt
ggtgctgaagctgaagacatcgactttgaaaatgacttgctgacttgtccacctggcttt
gctgctggaatagaaattgaacagaagaagaaaccagcggtgattgcacgacaaattgtc
aatgttgctcagctcaatttagatgacgtgcttgcagaggaattcactttggatactctg
gcaccaagcgatgaggagaatgaatcagaggaagacgagagagaagtggtagcagcgaat
gaaaaccttcatcgatcagaaagtttagaaaatatccttccaaagatcagcaacgaaaca
acaacaaccaagtcacaacaaacaactaaaccaaactgggtcattaatatcaacacaaca
gaacctgtcaacaacttccacaagctcataccacacatggcatacgagtggccatttgag
ctcgatatctttcagaaacaagcaattttgtgcctggaacgcggcgactgtgtgtttgtt
gctgctcacacgtcggctggtaaaacagtggtggctgagtatgcgattgctttgtctact
aaacacatgacgaagacgatttatacgtcaccaattaaagctttgtctaatcagaagttt
agagattttcggatgagttttggagacgttgggctggtgacgggagacgtgcagattaag
ccggatgctgcgtgtcttattatgacgactgagattcttaggtctatgctgtacaatgga
tctgatgtgattcgtgacgttgagtgggttatctttgatgaagttcactacatcaacgac
acggagcgaggtgttgtgtgggaggaagtgttgatcatgctgcctgatcatgtcaatatt
gtgctgctgtctgcgactgtcccaaacacttatgaatttgctgactggattggacacaca
aagcaaaaaccaatctatgtgatcagcactgcaaagaggcccgtccctcttgaacattat
ctctacactggaaacagcagcaagacatgtgatgaactttttctacttgttgatgctgac
ggacgattcttgactaaaggatatcaacgtgctgttgatgcaaagaaggcaagagagacg
aagagttcggccgggtttggaacaaagggaccactgcatggaggaaattttaagcaggac
aaaaacatctttctttctcttattaataaactaaagaaagacgatcgtttgcctgttgtc
gccttcacgttttctcgtaaacgatgtgatgagaatgcaagcggtctgacaacaattgat
atgacgacgagtgcagagaagagtgagataaccgtcttcttcagcaaatcagtggcaaga
ttgaaaggcacagacaaacaactaccacaggtgttgagattgaaagaattgttagcacgt
ggtattggagtccatcacagtggcattctaccaatcatgaaagaggtaattgagatgctc
tttcaacgtggcctcgtcaagctcttgtttgctactgaaacgtttgcaatgggtgtcaac
atgccggctcgtactgtggtgtttgactctacaaggaaacacgatgggacagcattgaga
aatcttctttcaggtgaatatattcagatggctggacgagctggaaggaggggattggac
tcgacgggcactgtcatactcttgtgtaagggagatgtacctgagacgtcagaattacac
caaatgatgttgggtcgtcctacaaagctcgagtcaaagttccggctcacttacagcatg
atactcaacctgctgcgggtggaacagctgcgagttgaggacatgatgaagcgcagtttt
gctgaactcgatcttcaacgagacgcacaacaagcatcaagtcagcggcaagaactggag
cagcagattaaggattttcaagagaagacttttccaatgtgcgacgacatagaagaatat
tactttgctgcatcggagttgaatgagttgaagcattcactgcagtcacagatcaccaat
tctccacaagcagccaaactcctctcgtccggtcgtatcatcgtcatcaacaaccaacac
cacaacaacacgttagccgttctcctccaaccctcaacatcccgcagtcgtctgacaaca
tccgtgagtgacacatcaaagtcatacacagttttgattctttgcaatgagaaacaacga
gacgtgacgtcacagcaaccaactacacatgcatctcactacacaccgtcaactcctgct
gtcatatcgggacgaacgccgttgttttgtccggatggtccgtgtggtcacgtggtggtt
gatgtgaagccgattgagatcgctgtgattactgatcggatgttacgagtgaatgcgagt
tatattattgatgattataggaagaggcaacagacgaggtttagggacaatccaccagga
agggaatgctctattgctactcaagagcttcttcggcttgttgaaaccaaccctgatggt
ctcgaagcaatagatccagtcaaagatctcaacatgagagacatcgacttcatagagaag
ttcagacgctcacagtttctagagcaatcactccagacatttcagtgcgttcactctccg
cattttgttgaagcgtttgaacaaacgagaaggaagcagaaaatgttggagagtctcaat
cgattgaagtttcttctctctgacgagagtcttcaactgctgccagaatatcgacaaaga
gttgaggtgctcaagcgacttgcttttattgacgttgatacaaatgttcagttgaagggt
cgtgtggcttgtgagattagcaaccatgagttgtttatcactgaactggtttttgagaac
attcttcgtgacctggacccaacagaaatcgtcgctattctttcttgttttgtctttcaa
cagaaacacaccagtgaacctcaactaacagagacactacagaatacaaaggaccaggtg
atcgatctcgcaactagattggctggagtgcaaatggagtgcgatctccaaatcaccgta
gaggagtttgttggagaacttcactttggtttagttgaagctgtttacgaatgggcaaga
ggaatgccattttcagagatcaccaatctaacagacgttcaggagggcatcatagtgcgt
tgcatccagcgactagacgaagtatgtcgtgatgttcgtacgattgcaaggatggtcggt
gaccctgtactgtatgagaaaatggaccaaggctcgtcgctcatcaaacgagacattgtt
tttgctgcaagcttgtacactcaatga
DBGET
integrated database retrieval system
