Corticium candelabrum: 134190719
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Entry
134190719 CDS
T11492
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cclm Corticium candelabrum
Pathway
cclm03013
Nucleocytoplasmic transport
cclm03015
mRNA surveillance pathway
cclm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134190719
09122 Translation
03013 Nucleocytoplasmic transport
134190719
03015 mRNA surveillance pathway
134190719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclm03019
]
134190719
03041 Spliceosome [BR:
cclm03041
]
134190719
Enzymes [BR:
cclm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134190719
Messenger RNA biogenesis [BR:
cclm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
134190719
Spliceosome [BR:
cclm03041
]
Complex C
Other components
EJC/TREX
134190719
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
134190719
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
134190719
NCBI-ProteinID:
XP_062515188
LinkDB
All DBs
Position
15:complement(5411502..5415292)
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AA seq
442 aa
AA seq
DB search
MTTRRLFSPQPLTMSEEAPDDLLDYEEDDHDQVAEAATANAGEAPRKDVKGTYVSIHSSG
FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAVLGMDVLCQAKSGMGKTAVFVLATMQQ
MEPVDGQVSVFVMCHTRELAYQIKKEYDRFSKYMPSIKTAVFFGGISIRKDEETLRANCP
HIVVGTPGRLLALAQSKVLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM
FSATLAKDIRPVCKKFMQDPMEIYVDDEAKLTLHGLQQHYIKLKDNEKNRKLFDLLDVLE
FNQVVIFVRTVQRCMALAQLLIDQNFPAIAIHRQMKQEERLSRYQSFKDFQKRILVSTNL
FGRGMDIERVNIVFNYDMPEDSDTYLHRVGRAGRFGTKGLAITFVSDEADARTLNEVQNR
FEVNITELPDEIDVNSYIEQDG
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgcgccgtcttttctctccacagccgctcacaatgtccgaagaagctccagac
gaccttctagactacgaggaagatgatcacgaccaagtcgccgaggcggcgaccgccaac
gcaggcgaggctcctcgcaaggacgtcaagggcacgtacgtcagcatccacagctcagga
ttccgcgacttcctcctcaaaccggaactactgagagccatcgtagactgcggcttcgag
cacccgtctgaagttcagcacgagtgcattccgcaggccgttcttggcatggatgtccta
tgtcaggcgaagagcggtatgggcaagacggctgtgtttgtgctcgccacgatgcagcag
atggagccggtcgatggccaggtgtcggtctttgtcatgtgccacacacgcgagctcgca
tatcagatcaagaaggagtacgaccgctttagcaagtacatgccaagcatcaagacggcc
gtcttctttgggggcattagcattcgcaaggatgaggagacgctgcgggccaactgtccg
cacatagtcgtcggcactcccggtcgtctcttggctctggcgcaaagcaaggttctcaac
ctcaagcatatcaagcatttcattctggacgaatgcgacaagatgctggaacagcttgac
atgagacgcgacgttcaagaaatctttcggatgacgccgcacgagaagcaggtcatgatg
tttagtgccacgctggcaaaggatatcaggcctgtgtgcaaaaagtttatgcaagatccg
atggagatatatgtcgacgacgaggcgaagctcacactccatggcctacagcagcactac
atcaaactgaaagacaacgagaagaatcgaaagctgtttgacctcctcgatgtgctggaa
ttcaatcaggttgtcatctttgtgagaaccgttcaacgttgtatggcattagctcagctt
ctcatcgaccagaactttccggccatcgccatacatcggcagatgaaacaggaagaacgg
ttgtctcgttaccagtcattcaaggatttccagaaacgtattctcgtgtcgaccaatctg
tttggacgtggcatggacatcgagcgcgtcaacatcgttttcaattatgacatgcctgaa
gattcggacacctacctccacagggtgggtcgagccggtcgttttggaactaagggtctc
gctattacgttcgtcagcgacgaggccgacgctcgtacattaaacgaagttcagaaccgg
tttgaggttaatatcaccgagcttcctgatgagatagacgtcaactcctacattgaacaa
gacggttga
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