Corticium candelabrum: 134190865
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Entry
134190865 CDS
T11492
Name
(RefSeq) exosome complex exonuclease RRP44-like isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
cclm Corticium candelabrum
Pathway
cclm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134190865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclm03019
]
134190865
Messenger RNA biogenesis [BR:
cclm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
134190865
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Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
CSD2
Rrp44_S1
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
134190865
NCBI-ProteinID:
XP_062515383
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All DBs
Position
15:5371907..5383681
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AA seq
953 aa
AA seq
DB search
MKTSRSFVKKTKKGAVLKVVREHYLREDVWTCWKDDERVTLESPFISQEALQSAPSSRLY
AFQHLILPDTNVVLHHIDFLEFHAIVNIVLLETVLEEVKHRNVSAYKRVRSILSDKSKNC
IVISNEHHKATCIQRQDGESANDRNDRTIRITSGWGEKQLESYDCRVVLLTNDRENKDKA
LASNLLACTVQEYAGSLSAWPELMDVTSSGDTYDGATTQTDLFSAHLSLSAFHENLKTGS
VFQGTFHTQRDNPFEGHVTVSVLNGQVLIHGAAHVNRAVDGDVVGIELLPENEWSTPSDS
TVLPEDEAAENEETERDDSSGIENPTSDKIRAKLDCSRKPSGRIVAIVKRNWRPYCGTLL
PTNMKTSVRRLFVPMDRKIPRIVIETRQGDALDRKRIVVSIDSWPRTCRSPCGHFVRVLG
DVGDKETENEVLLLEHDVPHQPFPQIVLSDLPAVPWIISDEEAKKRTDLRHLCICSVDPP
GCTDIDDALHCQMLENGNYEVGVHIADVSHFVRPGTALDKEAANRGTTVYLVDKRVDMVP
ELLSSNLCSLRPNEDRFAMSCVWEIKPTAEIIHTQYLKSIIRSQHAFTYAEAQLRIDDKH
KNDEVTKSLRSLNAMAKILKQRRVDKGALLLASPEVKFTLDDATHDPIDLEAKQLRETNS
MVEEFMLLANVSVAERISREFPVCAVLRRHPQPAPSNFEPLIKAASLKGITLEVDSGKAL
SNSLAQAVLPGNDYFCTLIRILATRCMTQALYFCSGTEPESEYFHYGLAADIYTHYTSPI
RRYADIMVHRLLATAIAADTTHPEMIDSRRVQEVCNHLNKRHRMGQYAGRASIQLSAQLF
FKGKNVTENGYITSVRKNAVYVLIPKYGIELPLFLDQPSFSPPFVYNERAPSQVSGSVCL
CTFDRVVVSVTLEEQDHMPGRLKLQLVEPKVHGAAVLNSDGQSLRKKRKVSST
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgtcgaggtcattcgtcaaaaagaccaaaaagggagcagttcttaaggtcgtc
agagagcattatctcagagaggacgtgtggacttgttggaaagatgatgagagagtaaca
ctagaatctccgtttatatcccaagaagctctgcagtctgcaccatcgtctcgcctctat
gcctttcaacacttaattcttccagacaccaacgtcgttcttcatcatattgattttctt
gaatttcacgccatcgtaaatatcgtgcttctagagacagttttggaagaggtaaaacac
agaaatgtgtctgcatataaacgagttcgaagcatcctcagtgacaagagcaagaattgc
attgttatttcaaatgaacatcacaaggcaacttgtattcagcgacaggatggtgagtct
gcgaatgacagaaatgatcgaacgatacgaataacttcaggatggggcgaaaagcagctt
gagtcttatgactgtcgagttgtgctactaacaaatgatagagagaataaggataaggca
ctagctagcaacttgttggcttgtacagttcaagaatatgctggcagtctgtctgcatgg
ccagagctgatggacgtaacaagtagtggagatacctacgatggggcaaccacacaaact
gatttatttagtgcacatctttctctgtcagcgtttcatgagaatctgaagactggtagt
gtttttcaaggaacatttcacactcaacgagataatccatttgaaggtcatgtgactgtg
tccgtccttaatgggcaggtgctcattcatggagctgctcatgttaatcgagctgttgat
ggtgatgtagttggcattgagctattgccagagaatgagtggtcgacaccgtctgattca
accgttttgccagaagacgaagcagctgagaatgaagaaactgagagggacgacagctca
gggatagaaaatcctacatctgacaaaattagggcaaagttggattgttccaggaaacct
agcggacgtattgttgccatagtgaagcggaattggcgaccctactgtggaacactattg
cccaccaacatgaaaacatctgttcggaggctgtttgttcctatggatagaaagattcct
cgaatcgttattgaaactcgtcaaggtgatgctctggatagaaagaggattgttgtttcc
attgattcgtggccaagaacgtgtagaagtccatgtggacattttgttagagttttgggt
gatgtaggagacaaggaaaccgagaatgaagtgttgttgcttgaacacgatgttcctcat
caaccgtttcctcaaatagttcttagcgatttgccagctgtgccatggattatatccgat
gaggaagcgaagaagagaacggacttgaggcatttgtgtatttgcagtgttgaccctcca
ggatgtactgatattgatgatgcattacattgtcaaatgttagagaacggaaactatgaa
gttggagttcacattgctgatgtcagtcactttgtcagaccaggaacagctctagacaaa
gaggctgccaacagagggacaacagtttatcttgtagacaagcgtgttgatatggttcct
gaacttctcagctccaatctgtgttcattacgaccaaacgaagatcgatttgcaatgtct
tgtgtgtgggagattaagccaacggcggaaattattcatactcagtatctcaaaagtatt
attcgttctcagcatgcatttacttatgccgaagcacaactgagaattgatgataaacat
aaaaacgatgaagtgactaagtctttgcgctctcttaatgcaatggcaaagatactgaaa
caaagaagagttgataaaggtgctctcctacttgcttctcctgaagtgaaattcactctt
gatgatgcgacacacgaccctattgatcttgaagcaaagcagcttcgagagacaaattct
atggtggaagaatttatgttacttgctaacgtttcagttgctgagagaatcagtcgagag
tttccggtatgtgcagttcttcgacgtcatccacaaccagcaccctccaactttgaacct
ctcatcaaggcagcctctctcaaaggcatcactcttgaagttgacagtggaaaggctctt
tctaactcactagctcaagcagttctgcctggaaatgactatttttgtacgttgatacga
atactggcaacacggtgcatgacgcaagctctctacttttgttctggaactgagcctgag
tccgagtattttcactacggtttagcagcagatatctacactcactatacctcacctata
aggagatacgctgacattatggttcacagactcttggctactgctattgctgcagacaca
acacatccagaaatgattgattctcgtcgtgtccaggaagtttgtaatcatttgaacaaa
agacatcgaatgggacaatatgcaggcagagcatcaatccaactaagtgctcagttattt
ttcaaaggcaagaacgtgacagaaaatggctacattacaagtgttcgaaagaatgctgtg
tatgtgcttattccaaagtatggaattgagttgccgctctttcttgatcagccatcattt
tctcctccttttgtctataatgaaagggcaccttctcaagtgtcaggaagtgtttgcctg
tgcacgtttgatcgagttgttgtgtctgttacactggaagagcaagatcacatgcccggt
cgattgaagcttcaacttgtggagcccaaagtacatggagctgctgtactaaattcagat
ggacagtcactacgaaagaaacggaaggtctctagcacatag
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