Corticium candelabrum: 134192201
Help
Entry
134192201 CDS
T11492
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cclm Corticium candelabrum
Pathway
cclm03013
Nucleocytoplasmic transport
cclm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134192201
03015 mRNA surveillance pathway
134192201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclm03019
]
134192201
Enzymes [BR:
cclm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134192201
5.6.2.5 RNA 5'-3' helicase
134192201
Messenger RNA biogenesis [BR:
cclm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134192201
mRNA cycle factors
Common to processing body (P body) and stress granule
134192201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
SLFN-g3_helicase
NAT10_TcmA_helicase
DEAD
NPHP3_N
nSTAND3
AAA_16
SRP54
AAA_22
ATPase
Ribosomal_S13_N
PhoH
AAA_7
NACHT
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
134192201
NCBI-ProteinID:
XP_062516888
LinkDB
All DBs
Position
16:complement(944853..962874)
Genome browser
AA seq
1078 aa
AA seq
DB search
MTSVVESYGPVTESLTFLDPDEGDFCADTQGTDYEFTDFTAPSQTQTQTLTQDISSALID
GISKDEGRQESGLETMMNGVKGLNFEENEDEEGAEYTKDLPEYACRYCGFHDPSAVVFCL
QSKKWFCNGRGNTSGSHIVNHLVRSRVKEVQLHRDGPLGDTILECYNCGCRNVFLLGYVP
AKAESVVVLLCRQPCASQNVMKDQNWDSTQWQPLISDRCFLPWLVRIPTEQEQLRARQVS
ASQINKLEELWKENPEATLEDLDKPGIDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDK
KLKESQTQDGIVVRWDIGLNKKVVACFTMPPSQTDMRLMAGDELRLRQVGNQWKGVGHVI
KVPAAFGEEIRLEMRSSVGIPMTNTHGFAVDFVWKSTSFDRMQSGMKTFAVDETSVSGYI
YHKLLGHEVEEHPIKCILPKRFSAPNLPELNHSQVYAAKIVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQKMGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLSAKSREAIDSEVSFLAL
HNQIKSCHDTYPELIKLQQLKDEQGELSSSDEKRYKSLKRQCERELLSNADVICCTCVGA
GDPRLAKFKFRMVLIDEATQATEPECMIPIVMGPKQVILVGDHCQLGPVVMCKKAANAGL
CQSLFERLVVLGIHPLRLQVQYRMHPSLSEFSSNLFYDGELQNGVTQADRLRTEGDLPWP
TPEHPMFFWSTSGQEEISTSGTSYLNRAEAANVEKIITRFLKCGISPAQIGIITPYEGQR
SYVVQYMQFNGQLNSKLYQDVEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRRLN
VALTRAKYGITIVGNPKVLSKQELWQHLLVHYQQCHCLVEGPLNNLKENTMKFPKPRKMI
NRHNPGASFMTRGMFGAYEFMSGRRYDAPRESMDTMYRESYYHTHDHMSYIGADRTAAAA
AAGLNVPVGMFIPAPPQAAQQFLGQSMGRPALSGLPGVAYSQHMPVVNASQDMSQPYSQP
LVPGGLSQPSQLTQPLSQPDLSQDYMDEFKSQPDMLSQDSEYHSGQTSQDSVHALYSR
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcgtcgtcgagtcgtacggcccggtgacggaaagtttgacctttctcgatcca
gatgaaggcgatttctgcgcggacacacaaggaacagactacgaattcacggatttcacg
gcgccgtcgcaaacacaaactcagacactgactcaagacatttcatccgctcttatcgat
gggataagtaaggacgaagggagacaagagagtggattggaaacaatgatgaacggcgtg
aagggactgaattttgaggagaacgaagacgaggaaggcgctgagtacacgaaggatctt
ccagaatacgcgtgtcgatattgtggctttcatgacccttcagcagtcgtattctgcctt
cagtcgaagaaatggttttgcaacggacgtggcaacacttcaggaagccacattgttaat
catttggtgcggtcgagggtaaaggaggtacagctgcacagggatggtccattgggtgac
actatcttggagtgttacaactgtggctgtcgtaatgtctttcttcttggctatgtgccg
gcgaaagcagagtctgttgtcgtgctgttgtgcaggcagccttgtgccagccagaatgtc
atgaaggatcagaactgggattctacacaatggcaaccgctcatcagtgatcgctgcttt
ctaccttggcttgtgagaataccaacagagcaagaacaactgagagctcgacaagtcagt
gcttcacaaattaataagctggaagaactgtggaaggaaaatccagaggctacattggag
gatcttgacaagccgggcattgatgaggaaccgcagcatgttttgttgagatatgaagat
gcgtatcaatatcagaatatctttggcccattggtcaaactagaagcagactatgacaag
aagctcaaggagtctcaaactcaagacgggattgtagtgcggtgggatattggcttgaat
aagaaagtggtcgcttgcttcacgatgcctcccagtcagacagacatgcgtctcatggct
ggtgacgaactcaggcttcgtcaggtaggaaaccagtggaagggtgttggtcatgtcatc
aaagtcccagcagcatttggtgaagaaattcgtctagaaatgcggagcagtgtgggaata
ccaatgacaaacacacatggatttgctgtagattttgtgtggaaatcaacatcgtttgac
aggatgcagagtggaatgaagacatttgcagtggatgagacgtcagtcagtggctacatt
taccacaagctgttgggacacgaagtcgaggaacatccaataaagtgtattttgccaaag
aggttttctgctcccaatctaccggagttgaatcattctcaggtctacgctgccaagata
gtcttacagaggcctctcagtcttatccagggacctcccggcacaggaaagaccgtcact
tcagcaaccatcgtgtaccaccttgcaaggcagaagatggggcaagtgttagtctgtgca
ccgagcaacattgctgttgaccaactgacagagaagatccacaagacgggcttaaaggtt
gtgcgactgtcagctaaaagtcgagaagctattgattcagaagtgtcatttctggccttg
cataatcagatcaagagctgccacgacacatacccggaactcatcaaacttcaacagctg
aaagacgagcaaggcgagctatcgtcgtccgatgagaaacgctacaaatcattaaaacgg
caatgcgaacgcgaacttctatcaaatgctgatgtaatttgttgtacttgtgtgggtgct
ggtgatccccggttggcaaaatttaaatttcgaatggttcttattgacgaggctacacaa
gccactgagcctgagtgtatgattcctattgtaatgggaccaaaacaggtgattttggtt
ggagatcattgtcaattgggacctgttgtgatgtgcaagaaggcggcaaatgctggttta
tgccagtcattgtttgagcgtcttgttgtcttgggcattcacccacttcgtcttcaagtt
caatatcgtatgcatccttcactcagtgaattttcatcaaatctattttatgacggagaa
cttcagaatggcgtaacacaagctgatcggctgcgaactgaaggcgacttgccatggccg
actcctgagcatcccatgtttttctggtccaccagtggacaggaagaaatatctacatca
gggacgtcgtacttgaacagagctgaagcagcaaatgttgagaaaattatcacacgattt
ctgaagtgtggcattagcccagcacaaataggcatcatcacaccgtatgaaggacaacgg
tcctatgttgttcaatacatgcaatttaatggacagctgaactcaaaactttatcaggat
gtcgaagtcgcaagtgttgatgcatttcaaggtcgagagaaagactatattattctaagt
tgtgttcgatctaatgagcatcagggcattggattcttaaacgatccaagacgtcttaat
gttgctctaacacgagccaagtatggcatcactattgttgggaatcctaaagttttgtcg
aagcaagaactatggcagcatcttcttgtgcactatcagcagtgccattgcttggtggaa
ggtccactcaacaacttaaaagagaacacaatgaagtttccaaagccacgcaagatgatt
aatcgacacaatccaggagccagctttatgactcgtggtatgtttggtgcatacgagttt
atgtccggtcgtcgctatgatgcacccagagagagcatggatacaatgtatcgcgagagt
tactaccacactcatgatcatatgagttacattggagccgatcggacagcagcagcagct
gcagctggtctcaatgttcctgttggtatgtttattccagcgccgcctcaagctgctcaa
cagtttctgggtcagtcgatgggcagacccgcactgagtggactgcctggtgtggcatac
tctcagcacatgcctgttgtgaatgccagtcaggacatgtcacagccgtactcacagccg
ttagtgccgggtggtttgagtcagccgtctcagttgactcagcctctttcacagccagat
ttgtcgcaggactacatggatgaattcaaatcacagccagacatgctatctcaagactcc
gaatatcacagtggacaaacctcccaagattcagtccatgccctctactccagatag
DBGET
integrated database retrieval system
