Corticium candelabrum: 134192653
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Entry
134192653 CDS
T11492
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5-like isoform X1
KO
K11125
protein SMG5
Organism
cclm Corticium candelabrum
Pathway
cclm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134192653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclm03019
]
134192653
03032 DNA replication proteins [BR:
cclm03032
]
134192653
Messenger RNA biogenesis [BR:
cclm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
134192653
mRNA cycle factors
Common to processing body (P body) and stress granule
134192653
DNA replication proteins [BR:
cclm03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
134192653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
EST1-like_DNA_bind
Motif
Other DBs
NCBI-GeneID:
134192653
NCBI-ProteinID:
XP_062517385
LinkDB
All DBs
Position
16:complement(5305412..5339950)
Genome browser
AA seq
881 aa
AA seq
DB search
MFQAFTAESPMYLKLQSHLKTAGCFYHHLIVRLEREFSVDLKGVVLFSRSNQSSSQVQDY
VQEDDEIREWALSACHRCFVYLGDLARYQLEFEGGTTQVAKGYYKQAICLEPSVGLPHNQ
LALLSGNANQETDAAFHYLMCLASRVPFAGADHNLKRLFERNSNRLKHLDQEYCGEAKET
DIHGVVLRKFLVRFLDLQRKLLPPCRTSQEELSAQCENILHDFIESLAFKLHQMDYSNSE
TRDENADTCLSGGLMLKIVALSMLASHKLRLQGSASTPAATSFALSLYSQLLQHCTQSIN
SWKILFQQGHAPHNATSLPCEDDFRRNNKSKQNVSLEDKCDSEETAGKEEPSKRARPVGR
RRRRVVGESDSDEEVEEADNIEELSEDDLSEGGGDFDSDGLSPELSDISDGEESSSTPKD
ALGKCEEQKTSFKRPLAIRFPGMPSLQVSCEESESNVQRTVNKRETVDEANCQGIGDLGA
KGSIIEESNSEPELELSTAAFLRWLCSHPFLPSIKIIFDWLRIHPAIAASCTQTLSSFWS
RTAELLNSLPPEECLRLAGMTGFGNRSEWKQVDLLPEDYELLGFSPLSRALDLLQLNRDK
NFNTDGWMGLIRLQCLLSFGTFIADSKTVNVLHYNESSCQYIGPSQRAEQEAAVAAEISR
KKEEKDKLQREKLMKALAEQKLKSDVASMEQSLTQAVVSASPILVVDAQCLCTHLHFIRQ
FVASEKFIVVIPFHVIEALDELKKGKENHTARDAIKFLEQQLKTGNRWIRAQQAQETVDG
KADNIPPRYKKKDIAAWRFTRVVDCAHYFSQQAGGNMVTLLYSASHTAVVPPPQTVTSQE
GLMPNTGTRPSETALAIANKHGVVVEEVKKFHAKWVAKKRN
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggcatttactgcagaaagtcctatgtacttgaaactgcaaagtcatttgaaa
actgctggctgcttctatcatcacttaattgttcgtttagagagggaattctctgttgat
ctaaaaggggtggtattattctcaaggtcgaatcaaagcagcagtcaggtgcaagattat
gtccaagaggatgatgaaatcagagaatgggctttgtcagcatgtcacaggtgctttgtc
tatctcggtgacctggcacgatatcagttagaatttgaaggtggaacaacacaagtggca
aagggatattacaagcaagctatttgcttagaaccaagtgttggtttgcctcataatcag
cttgctttattgtcaggaaatgcaaatcaagaaacagatgcagcattccattacttgatg
tgtcttgcaagtcgtgttccttttgctggtgccgaccataatttaaaacgactctttgaa
agaaacagtaatcgactgaaacatctcgatcaggaatattgtggagaagcaaaagaaaca
gacatacatggtgttgttctaagaaagtttcttgttcgctttctggacttgcagagaaaa
ctgctgcctccttgcaggacttctcaggaagaacttagtgctcaatgtgagaacattcta
catgattttattgaaagtcttgcattcaagcttcatcaaatggactactctaattcagaa
acaagagatgaaaatgcagacacttgtttgtcgggtggactgatgctcaagattgtggct
ttatcaatgctagcatctcacaaactgagattacagggctcagcctctactccagcagct
acttcatttgctctatctttgtatagtcagctgttacagcactgcacccagtcaattaat
tcttggaaaatactgtttcagcagggccatgcgcctcacaatgcaacatctttgccttgt
gaagatgatttcagaaggaacaataaaagcaaacaaaatgtatcattagaagacaagtgt
gatagtgaagaaactgcaggaaaagaagaaccaagtaaaagggcaagaccagtgggtaga
agacgtcgacgtgtggtaggagagagtgacagtgatgaagaagttgaagaagctgacaat
atagaggaacttagtgaagatgatctcagtgagggaggaggtgattttgacagtgacggt
ctttcacctgaattgagtgacataagtgatggtgaagaaagctcaagcacaccaaaagat
gcactaggtaagtgtgaagagcagaaaacgtcgttcaagcgacctcttgctattcgtttt
ccgggaatgccttctttacaagtctcatgtgaagaaagcgagagtaacgttcaaagaaca
gtaaacaaaagagaaacagtagatgaggctaattgtcagggaataggcgatttgggtgcc
aagggaagtataattgaggaaagcaactcagagcctgaactggaactttcaacagctgct
ttccttcgttggttgtgctctcatcctttcttaccatcaataaaaattatctttgattgg
ttgaggattcatccagcaattgctgcttcttgcacacagacgttatcctctttctggtct
cgcacagctgaattgctgaatagtttgccacctgaggagtgtttacgtttggcaggcatg
acaggatttggcaacagaagtgagtggaagcaagtggaccttcttcctgaagactatgag
ttacttggattttctccgctttctcgtgcattggatttgttgcaattgaatcgagacaag
aattttaacacagatggatggatgggtcttatcagacttcaatgtttgttgagttttgga
acttttattgctgactccaagactgttaatgtgctacattacaatgaatcatcttgccag
tatattggaccgtcacaaagagctgaacaggaggcagcagtggctgctgagatttcaaga
aagaaagaggaaaaggacaagctacaacgagaaaagttgatgaaagccctagctgagcag
aaattgaagagtgatgttgcctctatggaacaaagcttaacacaagcagttgtgtctgct
tctcctattcttgttgttgatgctcaatgtttgtgtactcatcttcactttatcaggcag
tttgttgctagtgagaagtttattgttgttatcccatttcatgtaattgaagctcttgat
gagttgaagaaaggcaaagaaaatcacactgctagggatgctattaagtttcttgagcag
caactcaaaacaggcaacagatggattcgagcacaacaagcacaagagacagttgatggc
aaagcagacaacataccaccacgatacaagaagaaagacattgcagcctggcgttttacg
cgtgttgtggactgtgctcattatttctctcaacaagctggtggcaatatggttactctg
ctttacagtgcttcccacactgctgttgtcccaccacctcagactgtcacatcacaagag
ggtcttatgccaaatacaggcaccagaccatcagaaacagcactggcaattgcaaacaaa
catggagttgttgtcgaagaagtaaaaaagtttcatgcaaaatgggtggccaagaaaagg
aattaa
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