Corticium candelabrum: 134195378
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Entry
134195378 CDS
T11492
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
cclm Corticium candelabrum
Pathway
cclm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134195378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclm03041
]
134195378
Spliceosome [BR:
cclm03041
]
Complex A
U1 snRNP components
U1 related factors
134195378
Complex B
134195378
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
FF_PRPF40A
WW_TCERG1
DUF4936
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
134195378
NCBI-ProteinID:
XP_062520380
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All DBs
Position
20:2761545..2775989
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AA seq
701 aa
AA seq
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MAEPANKTPWQEHTAPDGRKYYYNSDSKESSWTKPDDLKTAGELKLLSCNWKEYKTEQGR
SYFYNSETKESTWTCPPELQASENESQSEDTPSKVTTQAESAANTESTTTTTTTTTTTTT
TTESSNQQEAATSKFDRDREIAREALKELLREKNISSTASWEYASRQIGADARFHLLKRS
NERKQVFNEYKIQKGKEERELQRRKQRESREAFQTLLETHEKVYPDMRWRHCCELFGDHT
AFKAVHASERREIFEEVIYQLGKKEKTEEQERQNRHQKTMKEIYMNMKGVTYKTTWAECL
GMLETNPDFTEDDSLVGLDKEDALIAFEVYIRELERARDDELHTARVKARRQDRYNREAF
VAFLEELNKLKKLTSMSFWVELYPDVSADPRYDAMLGQGGSSPLDLFKLYVADLKDRLHD
EKKLIKEIIKDAGLQVDIDTQFEMFEATVLADDRSDPLDRGNIKLTYKSLHEKAEAREKE
RLKAEERKFRKREAAFKEMLKDSDPPITKNSSWELVRLRFENEDAFKDVAEESERLFMFK
DFVKNLESDEEPREKKDEKKSHRSHKKRKRRSRSYSPSRSRSRSASDSASDGDRREKRKR
SKKRDRSSPATPPRRRSKEQTPSSDSEKESRKKKHKKKSKKRRRHSSPSVSPEPTPKKKS
KKSSKAGNEAASEQASLPDSSEDEAELQMRREQLLRQLEQG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggccgagccagcaaataagacgccgtggcaggagcacacggctccggatggacgcaaa
tattactataattcggattcaaaggagtcgagttggacaaagccagacgatttgaaaaca
gccggagagctgaagcttctgtcttgcaactggaaagaatacaaaacagaacaaggtcgt
tcctatttctacaactcagaaaccaaagaatcgacatggacgtgtccaccagaacttcaa
gcttctgaaaatgaaagtcaaagtgaagacacacctagcaaagtaacaactcaagcagaa
tcagcagcaaataccgaatcaacaacaaccacaaccacaacaacaacaacaacaacaaca
acaacagagagtagcaaccaacaggaagcggcgacgtcaaagtttgacagagatagagaa
attgccagggaagcactcaaggagttactaagagaaaagaacatttcgtcgactgcatcg
tgggagtacgcttcaagacagattggtgccgatgctcgtttccatctactgaagagatcc
aacgaacgtaagcaagtattcaacgaatacaagatccaaaaaggaaaagaggagcgggaa
ttgcaaaggcggaagcagcgcgaatcgagagaggcctttcagacgttgcttgagacacac
gagaaggtctatccagacatgcgatggaggcattgctgtgaattgtttggtgaccacaca
gccttcaaggcagtacatgcatctgaacgaagggaaatatttgaagaagtcatttatcaa
ctgggaaagaaagagaagactgaagaacaagaaagacaaaatagacatcagaaaacaatg
aaggagatctacatgaacatgaagggtgtgacatacaaaacgacatgggctgagtgtttg
gggatgctggaaactaatcccgactttactgaagacgactcacttgtagggctagataaa
gaggatgcactcattgcgtttgaagtttacatccgggaacttgagagggcacgagacgat
gagttacatacagctagagtgaaggcaagacgtcaagatagatacaaccgtgaagcattt
gtggctttcttagaagagctaaataaattgaaaaagttgacatcaatgtccttttgggtc
gagttgtatcctgatgttagcgctgatcctcgatatgatgcaatgcttggtcaaggcgga
tctagtccattggatttgttcaagctgtacgttgctgatctgaaggatagactgcatgat
gagaagaagctgatcaaagagattattaaggatgctggtctccaagttgatattgataca
caatttgagatgtttgaggctactgttcttgcggatgatcgatccgatccactagatcgc
ggaaacatcaaactgacgtacaaaagtctgcatgaaaaagctgaagcaagagagaaagag
aggctgaaagcagaggagaggaagtttcggaaacgtgaggctgcattcaaggaaatgctg
aaggacagtgaccctcctattaccaagaactcatcatgggaattggttcgacttcgtttt
gagaatgaggatgcattcaaagatgttgccgaagagtcggagagattgtttatgttcaag
gattttgtcaagaatcttgagagtgatgaagagccaagagaaaagaaggatgaaaagaag
tctcatcgttctcacaagaaacgtaagaggaggtcacgctcttactcaccgtcgagatct
cgatcacgatcagcttctgattcggcttctgatggtgatcgaagagaaaaacgtaagcgt
tctaagaagcgtgatcgcagctcaccagccacaccacctcgtcgtcgatctaaagaacag
acaccgtcatcagattcagaaaaagagtcacgaaagaagaaacacaagaagaaatccaag
aagagaagacgacattcttcgccttcagtatctcctgaaccaacaccaaaaaagaagtct
aagaagtcatcaaaggctggtaatgaggccgcttcagagcaagcatctcttcccgattca
agtgaggacgaagctgagttgcagatgcgtagagagcaactgttacgacaactagaacaa
ggatag
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