Coregonus clupeaformis (lake whitefish): 121530678
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Entry
121530678 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04120
Ubiquitin mediated proteolysis
cclu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121530678
04120 Ubiquitin mediated proteolysis
121530678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121530678
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121530678
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121530678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-RING_16
zf-C3HC4_3
zf-RING_11
zf-RING_5
zf-ANAPC11
zf_RING_Vps8_fungal
zf-RING-like
zf-RING_Vps41
FANCL_C
Motif
Other DBs
NCBI-GeneID:
121530678
NCBI-ProteinID:
XP_041691762
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Position
29:40937302..40951751
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AA seq
617 aa
AA seq
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MVRAALVTATSLALTGAVVSHAYLLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFIKCFHWLA
EDRVDFMERSPNISWLFHFRVLSLMVLLGVLDFLFVNHACHSIITRGASVQLVFGFEYAI
LMTMVLTTFIKYTLHTVHLQSDSPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLLASDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRASNPNQPPAPAPAQPPAPAAPANAP
VPGPPGNVGPGMMPHFPPGLFPFWGPFPGAAPPAGAPEAAQTQGAGTSQSAGASTVGAAP
APGGPMPGSPFPSFPPPLFPSAPWLTMPPPPPFVSSMPPPPPALSTMSEAELRELEQEGR
RGLEARLQCLHNIHTLLDAAMLNIHHYLTTVATLTPPRSENSSAAGEASGLSPSSTSAET
QENDSQNSTAAEPEAVNGATGFSQPDSTTLGDSEDKRDGEEVGEDGEEVGEDGDPNPSEL
RRRRLRKLETTPPPPDH
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgtgcggccctggtgactgccaccagtctggctctgactggcgcagtggtttcc
catgcctacttgctcaaacaccagttctaccccactgtggtgtacctgaccaagagcagc
cccagtatggcggtgttgtacatccaggcgtttgtgttggtgttcctgttgggaaagttc
atgcgtaaagtcttctttggacagctgagagctgcagagatggagcacctgatcgagcgg
tcctggtatgctgtcacagagacgtgtctggcctttacagtgttcagagatgacttctct
ccccgcttcgtagcactcttcaccctgctgctcttcatcaagtgcttccactggctggcc
gaggacagggtggactttatggagagaagtcctaatatatcctggctcttccacttcagg
gtgttatctctgatggtgttgctgggagttctggacttcctgttcgtcaaccatgcctgt
cacagtatcatcacacggggggcctctgtccaactggtctttggatttgagtacgccatc
ctgatgactatggtgctcaccaccttcatcaagtacaccctccacacggtccacctccag
agtgacagcccctgggacaacaaagcagtctacatgctgtacactgagctcttcactggt
ttcatcaaggtcctcctgtatatggcgttcatgaccatcatgataaaggtgcacaccttc
cccctattcgccatccggcccatgtacctggctatgaggcagttcaagaaagccgtaacg
gatgcaataatgtcccggcgagccatccgcaacatgaatacactttacccagatgccacc
cctgaagatctgctggcttcagacaacgtgtgtatcatctgtcgtgaagagatggtgact
ggagccaagaaacttccctgcaaccatatcttccactcaagttgccttcgctcctggttc
cagagacagcagacgtgtcctacatgtcgtatggatgtcctccgggcctctaaccccaac
cagccccccgccccagcccctgcccagccccctgctccagcagcaccagccaacgcccct
gtccctggtccacctgggaacgttggcccaggaatgatgccccacttccccccagggctg
tttcctttctggggccccttccctggagcggccccccctgctggtgccccagaggcagct
cagactcagggagctggcaccagtcagtccgctggggccagtacagtcggtgctgctccg
gctccaggaggccctatgcctgggtcccctttcccctccttcccacccccactgttcccc
tcagctccgtggctgactatgccaccacctccaccgtttgtgtcatccatgccccctcct
cccccggccctgtccaccatgtcagaggctgagctgagggagctggagcaggagggccgt
agaggcctggaggccagactgcagtgtctccacaacatccacactctactggacgctgcc
atgctcaacatccaccattacctcactaccgtcgccacactcactcctcctcggtcagaa
aacagcagcgctgctggcgaggccagtggattatctccttcctccactagtgcagaaacc
caggagaatgactctcagaacagtacagctgctgaaccagaagctgtgaacggggcgaca
ggtttctcccagccagactctaccacgttgggcgacagtgaagacaagcgggatggagag
gaagtcggggaagatggagaggaagtcggggaagatggagaccccaacccttcagagctg
aggcgccgtcgtctccgcaaactcgagaccacaccccctcctcctgaccactaa
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