Coregonus clupeaformis (lake whitefish): 121530780
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Entry
121530780 CDS
T08357
Name
(RefSeq) replication factor C subunit 5-like
KO
K10756
replication factor C subunit 3/5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03030
DNA replication
cclu03410
Base excision repair
cclu03420
Nucleotide excision repair
cclu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121530780
03410 Base excision repair
121530780
03420 Nucleotide excision repair
121530780
03430 Mismatch repair
121530780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cclu03032
]
121530780
03036 Chromosome and associated proteins [BR:
cclu03036
]
121530780
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121530780
DNA replication proteins [BR:
cclu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121530780
DNA Replication Termination Factors
ELG1-RFC complex
121530780
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121530780
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121530780
Check point factors
HRAD17(Rad24)-RFC complex
121530780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_14
AAA_22
AAA_24
RuvB_N
AAA_16
AAA_assoc_2
ResIII
DEAD
DUF815
AAA_5
ATPase_2
PhoH
AAA_7
AAA_30
TIP49
AAA_19
AAA_2
Mg_chelatase
DNAX_ATPase_lid
Thioredoxin_6
Motif
Other DBs
NCBI-GeneID:
121530780
NCBI-ProteinID:
XP_041691945
LinkDB
All DBs
Position
18:complement(42088731..42098939)
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AA seq
335 aa
AA seq
DB search
MASTSKIPLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGK
TSTVLASAKQLYKEKEFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRL
EFVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDNVYTCTGHPLRSD
IANILDWSLNKDFTSAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRMGLLIKLA
DIEYRLASGTSEKIQLSSMVAAFQAVRDIVVNEAA
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgactagcaagataccgttgcagtcaagaaatttgccctgggttgagaaatac
aggccacagaccctagatgacttgatttctcacaaggacatattaagcaccatccagaaa
tttatcagtgaggacaggctgccacatctcctattctatggacccccaggcacagggaaa
acatctactgttttagcctctgccaagcagctctacaaggagaaggagttcaacgctatg
gtcctggagcttaatgcgtcagacgacagaggtatcgatgttgtacgaggacccatcctg
agttttgccagcaccaggaccatattcaagaagggtttcaagttggtgatcctggatgag
gctgatgccatgaccagggatgcccagaatgcattgcggcgagttattgagaagtacaca
gagaacaccaggttctgtctgatctgtaactacctttcgaagatcatcccggccctgcag
tctcgctgcaccaggttccgcttcggacccctgtctcaggaccagatgatacccaggctg
gagtttgttatccagcaggagagcattgatgtaactccagatggaatgaaagctattgtg
accctctcatcaggagacatgagaagatccctcaacatactgcagagcaccagcatggca
tatgggaaggtcacagaggataatgtttacacctgcactggtcacccactacgatcagat
atagccaacatcctggactggtccctaaacaaggatttcacctccgcttacaatcagatt
cttcagctgaagacgctgaaaggcctagccctgcatgacattctgactgaggtccatcta
ctgatacacagagtggacttccctcctgccattcggatgggcttgcttatcaagttggca
gacattgagtaccggctggcctcgggaaccagtgagaagatccaattgagttcgatggtg
gcagctttccaggcagtgagagacatcgtggtcaatgaggccgcctag
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