Coregonus clupeaformis (lake whitefish): 121530920
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Entry
121530920 CDS
T08357
Name
(RefSeq) rab5 GDP/GTP exchange factor
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121530920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121530920
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
121530920
Protein recycling
Other Rab GTPase associated proteins
121530920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
zf-A20
DUF5601
ATP_sub_h
Motif
Other DBs
NCBI-GeneID:
121530920
NCBI-ProteinID:
XP_041692228
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All DBs
Position
18:49590762..49595538
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AA seq
474 aa
AA seq
DB search
MAAEQQRGIRVTQAELLCKDACGYYGNPAWQGFCSKCWRERTRKEEAVRQETGPHNDAGS
PLTFSKFEEKKNMEKGRKVNTMRRLFWGGPSPPKRPESSEGQAATLKAYQSIEPGDFTSF
LKLLRNPSSQRLQSRCTAFLNTMEAYHGLPVQKQSDLVQDFYQNIAVHFSSLSEVQVSQM
MEHIEKLIMTRLHKWVFCHDSCDDEVKDLALQRRIRSLNWVTPHMLRVPFPDERAEVVSD
PFLPAITAIIEMDAKRAPQDKLTCICKCSQNVFQALSTSNSEPANADDFLSGLIYVVLKA
NPPRLHSNMQYVIRFGLPHSLMAGESGYYFTNLCCAVAFIEKLDGPALNLSPEEFEGYMQ
GRRAPSKRGSERQKMARETQDQLEDLKGRQEKVDQGMNALKEQLQHWVQSVQAQIDEVTS
QSALAQEEIKAQSELFQSHSLSILTQADDVKDQSVLLLEGKESNNNTCLTETEC
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggagcagcaaagagggatccgagtcactcaagcagagcttctctgcaaggat
gcgtgtggttattatggtaaccctgcatggcagggcttttgctccaagtgctggcgagaa
cgaacccgcaaagaagaggctgtcaggcaggagactgggccccacaatgatgcaggttct
cccctcaccttttccaaatttgaggagaagaagaatatggagaagggtcgcaaagttaac
acgatgaggaggctcttctggggtggaccgtcccctcctaaacgcccagagtcttcagag
ggccaggcggctacattaaaagcctatcagagcattgagccaggggactttaccagcttc
ctgaagctgctgaggaacccatcctctcagcgtctgcagtcccgttgcaccgctttcctc
aacaccatggaggcttaccatggcctgccagtgcagaagcaatctgaccttgttcaagac
ttttaccagaacatcgctgtgcatttcagtagtctgtcagaggttcaggtctctcagatg
atggagcacattgagaagctgatcatgacgcgtctgcataagtgggtgttctgccatgac
agctgtgacgatgaagtgaaagacttggcactccagaggaggatacggtccttaaactgg
gtcaccccccacatgctgagggtgcctttccctgatgagagggccgaggttgtcagcgat
ccctttctacctgctataacagccataatcgagatggatgccaagcgagcgccacaggac
aagcttacatgcatatgtaagtgcagtcagaatgtcttccaggctctctccacttctaat
agtgagccagcaaatgctgacgacttcctgtctggcctgatttacgtggtactaaaggcc
aacccaccccggcttcactccaacatgcagtatgtgatccgcttcggcctaccacacagc
ctgatggcaggagagagtggctactacttcaccaatttgtgttgcgcagtggccttcatt
gagaagctggatggaccagcactcaaccttagcccagaggagtttgaggggtacatgcag
ggtcgccgtgctccctccaagaggggcagtgagaggcaaaagatggccagggagacgcaa
gaccaactagaggacctgaagggccgacaggagaaggtggaccaaggaatgaacgccctc
aaagagcagttacagcattgggtacagtcagtccaggcacagatagatgaggtaacatcc
cagtctgctctggcacaagaagaaattaaagcccagtcagagttatttcaaagccattct
ctctctattctaacacaggcagatgatgtcaaagaccagtcagtgctgttgctagagggt
aaagagtccaacaacaacacttgtctaacagagactgagtgttag
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