Coregonus clupeaformis (lake whitefish): 121530949
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Entry
121530949 CDS
T08357
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121530949 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121530949 (usp39)
Spliceosome [BR:
cclu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
121530949 (usp39)
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GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
121530949
NCBI-ProteinID:
XP_041692280
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Position
18:50414774..50418860
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AA seq
495 aa
AA seq
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MVSVKREREIDLEDDDEVPVKIGRSSEDGRSRHCPYLDTINRSVLDFDFEKLCSISLSHI
NVYACLICGKYFQGRGLKSHAYTHSVQFTHHVFLNLHTLKFYCLPDNYEIIDSSLEDITY
VLKPTFTRQHISGLDKQGKLYRAYDGTTYLPGIVGLNNIKANDYANVVLQALSNVPPLRN
YFLEEDNYRGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKNF
QITKQGDAVDFLSWFMNALHGALGGTKKKPSSLTKVFQGSMRIFSKKLPHPDLPPEEKEA
LLLKEEYQEEMSDTTFLFLTLDLPTAPLYKDEKEQLIIPQVPLFNILAKFNGNTEKEYKT
YKENFLKRFQLLKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLTEEAQVTE
KNTTYDLVANVVHDGKPTEGAYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIW
KRRESEDDTTNHTGA
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggtatctgtaaaacgggagcgagaaattgacttggaagacgatgatgaagtacctgtg
aaaattggccgttcatccgaggacggcagaagtcgccattgtccctacctcgacacaatc
aataggagtgtactggacttcgattttgagaagctatgctccatctccctctcccacatc
aacgtatatgcctgtctaatctgtgggaaatacttccaaggtagaggtctgaagtcccat
gcctacactcacagtgtgcagttcacccaccatgtgttcctcaatctgcacaccctcaag
ttctactgtctgccagataactacgagatcattgactcatccttggaagacatcacgtat
gtattgaagcccacattcaccagacagcacatctctggattggataagcagggcaagctg
tatcgagcctatgatggcaccacctatctgcctggcatcgtagggctgaacaacatcaag
gctaatgactacgctaatgtggtgctgcaggccctgtccaatgtgcccccactgcggaac
tactttttggaagaggataattaccgcggcatccgtaggccgccgggtgacatcatgttc
ctgctggtgcagcgattcggtgagctgatgcgcaagctgtggaacccacggaacttcaag
gcccatgtctcgccccacgagatgttgcaggctgtagtgctgtgcagcaagaagaacttc
cagatcaccaagcaaggggatgctgtggacttcctgtcatggttcatgaacgctctgcac
ggcgcgctgggaggaaccaagaagaaaccctcaagccttaccaaagtgttccagggttcc
atgcgtatcttctccaagaagcttcctcacccagatttgccacccgaggagaaggaggct
ctgcttctgaaggaggagtaccaggaggagatgtctgacaccaccttcctcttcctgacc
cttgacctccccacagccccgctgtacaaggatgagaaggagcagctcatcatcccacag
gtccccctcttcaacatcctggccaagttcaacggcaacacagagaaggagtataaaaca
tacaaagagaatttcctcaagaggttccagttgctcaagctgcccccctatctcatcttc
tgcatcaagaggttcaccaagaacaacttctttgtggagaagaaccccaccatcgtcaac
ttccccatcacgaacgtagaccttcgtgagtacctgacagaggaagcacaggtcacagag
aagaacacaacctatgacctggtggccaacgtggtacatgatgggaagcccactgagggg
gcatacagaattcatgtccttcatcatggcactgggaagtggtacgagctccaggacctg
caggtgacagatatcctgccccagatgatcacactgtcagaggcctacattcagatttgg
aaaagaagagagagcgaagatgacacaactaaccacacgggggcgtga
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