Coregonus clupeaformis (lake whitefish): 121531470
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Entry
121531470 CDS
T08357
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1-like
KO
K04957
hyperpolarization activated cyclic nucleotide-gated potassium channel 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121531470
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
121531470
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Motif
Pfam:
Ion_trans
Ion_trans_N
cNMP_binding
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
121531470
NCBI-ProteinID:
XP_041692640
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Position
19:complement(6867969..6920831)
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AA seq
1198 aa
AA seq
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MVDDGGEYGGGDKDTKKKSTGIRLKSLPPPGPSSPTSSWKSNGDGDPKSGTAGDLETYVA
IKNNLNGDCRLVRGSLSSITGRHTLGSDLAEQQRLISEADAGANKESYPGGETGLRGEQG
AQGAGGRGAGAHRRSSVFDQSTFINLEGTEPIMPDEAEQLYRVGFMHRQFGAMLQPGVNK
FSLRMLGSERAVEHERERVKSAGFWIIHPYSDFRFYWDLIMLFLMVGNLIIIPVGITFFK
DEHTPPWIVFNVISDTLFLIDLVLNFRTGIVKEDNTEIILDPQTIKIKYLKSWFVVDFIS
SIPVDYIFLVVETRIDSDFYKTARALRIVRFTKILSLLRLLRLSRLIRYIHQWEEVFHMT
YDLASAMVRIVNLIAMMLLLCHWDGCLQFLVPMLQEFPSDCWVTRNKMVNDTWGQQYSYA
LFKAMSHMLCIGYGMHPPVGLADVWLTILSMIVGATCYAMFVGHATALIQSLDSSRRQYQ
EKYKQVEQYMSFHKLPAGMRQRIHDYYEHRFQGKMFDEESILGELNEPLREEIVNFNCRK
LVASMPLFANADPNFVTSVLTKLRFEVFQPTDSVVMEGAVGRKMYFIQHGVVCVITKGTK
ETKLSDGSYFGEICLLTRGRRTASVRAETYCRLYSLSVDNFNEVLEEYPVMRRALETVAL
DRLDRIGKRNSVLQHKVTQNSGAGNLLENEIIQRIVQHDRDMAIQSNISPLYLDPPSPTS
TPGVIWAPLVQGPLQAAAATTSLALAYSHSQLHAQLPPVLFHRPVSVSGSFKDPRGHRLQ
RGVFVGVSSGCGSGAASPAGSVKFRSGVDTPILASLRAQHLVSTASSMSPLSPMTSMYQP
TSSIISTNFQAQPSSASLFPLGQASIRGYPPSSSSCMAQHHPHHPYGPPGTHQQGASGRL
RFPAHSAPSGSTLSPLICSSVSHLLNQLQNSYSHTASAQQHVQMGPGHQERAGHLLLPHS
RCPYTTTGPSNPTQHHSSSGFLSMSIPEQAGVGGVGGPSSLVHHSPAGLHPGLLPQVLPE
HPAHSSHSALASLAQYGSGDVSPSCTPPLTHSPTVQSPLTGRTVLYHRHHSQLHSQPSSA
IGSHSSLTSQTSCPPQVDGRGQRAESLVDLFTQDVRTISTVSTSGSRSYLPQEGSNKLDS
PIPGHATPLSHYTPMGSEPPTPMSQGAPTSSHPNPSRPATPAKTSGAEYTVSELPSNL
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggttgacgacggaggagaatacggtggtggcgacaaggacaccaagaagaaaagtacc
ggtataaggctgaagtctctccctcctcctggaccttcatcccccaccagcagctggaag
agcaacggggacggggaccccaagagcggaaccgccggagacttggaaacgtacgttgcc
atcaagaacaacttgaatggggactgtcgtctggtcagaggtagcctttcctccatcact
ggtcgacacactcttgggtcagatctagctgagcagcagaggctgatctccgaggcagac
gccggtgctaacaaggagagttaccccggaggagagactggtctgaggggcgagcaggga
gcgcagggtgccggtggtcgcggtgctggcgcacatcgccgatcgtccgtcttcgatcag
tccactttcatcaacttagaaggaaccgaaccgatcatgccagacgaagcagagcagttg
taccgggtgggcttcatgcaccggcagttcggggcgatgcttcaaccgggagtcaacaag
ttctctctgagaatgttggggagcgagagggcggtggagcacgagagagaacgggtcaag
tctgcaggattctggatcattcacccatacagtgattttaggttctactgggatctgata
atgctgttcctcatggtggggaacctcatcatcatccctgtgggcatcaccttcttcaag
gacgagcacactccgccctggattgtctttaacgtcatctcagacaccttgttcctcatc
gacctggtcctcaacttccggacgggtatagtcaaagaggacaacacagagatcatcctg
gacccacagaccatcaagatcaagtatctgaagagctggttcgtggtggacttcatctca
tccataccagtagattacatcttcctcgtcgtggagaccaggatcgactcagacttctac
aagacggcccgggcgctgaggatcgtgcgctttacaaagatcttgagtttgttgaggctg
ctgaggctgtccaggctcatcagatatatacaccagtgggaggaggttttccatatgacc
tatgatttggctagtgcgatggtgaggatcgtgaacctgattgctatgatgctgctgctg
tgtcactgggatggatgtctgcagttcctggttcccatgctgcaggagttcccctctgac
tgctgggtcaccagaaacaagatggtgaatgacacgtggggccagcagtattcctacgcc
ctgttcaaggctatgagccacatgctgtgtattgggtacggtatgcaccctcccgtgggc
ctggcggacgtgtggctcaccatcctcagcatgatcgtgggcgccacctgctatgccatg
ttcgtaggccatgctaccgctctgatccagtcactggactcgtcccgacggcagtaccag
gagaagtataaacaggtggagcagtacatgtctttccacaagcttcctgccggcatgcgg
cagaggatccatgactactacgaacatcgcttccagggcaagatgtttgacgaagagagc
attctgggggagctgaacgaaccgctcagagaggagatcgtcaacttcaactgtcgtaag
ctggtggcttcgatgcctctgttcgccaacgccgaccccaactttgtgacgtcagtgctg
accaagctgcgctttgaggtgttccagcccacggatagtgtggttatggagggcgccgtc
ggcagaaagatgtacttcatccaacacggggtggtctgcgtcatcaccaagggcaccaag
gagaccaagctgtctgacgggtcctactttggagagatctgcctgctgactcgaggcaga
agaacggccagtgttcgtgcggagacgtactgccgtctgtactccctgtctgtggacaac
ttcaacgaggtcctggaggagtaccccgtgatgagacgggccttggagaccgtggctctg
gaccggctggaccgcataggaaagaggaactctgtgctccaacacaaagtcacccagaac
tcaggagctgggaacctcctggagaacgagatcatccagaggatcgtacagcacgaccgg
gacatggccatccagagcaacatctctcccctgtacctggatcccccatcccccacctcc
accccgggggtcatctgggctcccttggtccagggccccctccaggctgctgcagccacc
acctccctggctctggcctactcccactcccagctccacgcccagctccctccggtcctc
ttccaccgtcctgtctctgtctccgggtcattcaaggatcctagaggtcaccgtctgcag
aggggcgtgtttgtgggcgtgtccagtggctgtggctccggggctgcatccccggccggt
tctgtgaagttccgttctggagtggacactccgatattagcctcgctccgggcgcagcat
ctagtctccaccgcctcctccatgtctcctctgtcacctatgacctccatgtaccagcca
acctcctccatcatctccaccaacttccaggcccagcccagcagtgcctctctcttcccc
ctgggccaggcctccatccgggggtatccaccctcctcctcctcctgcatggcccagcac
cacccccaccacccctacggcccaccagggacccaccagcagggggcatcagggaggctg
agattcccagcccactcagccccttctggttccaccctaagccctctcatctgtagctct
gtcagccatctcctgaaccagctacagaactcttattctcacactgccagcgctcagcag
cacgtccagatgggacctggtcatcaggagagagcaggccacctcctcctcccccactcc
cgctgcccctacaccaccaccggccctagcaaccccacccaacaccacagctccagtggg
tttctgtctatgtctatcccagagcaggccggcgttggaggtgttggaggcccatcctcc
ctggtgcatcacagtccggcaggcctccaccccggcctcctcccacaggttctcccggag
caccctgcccattcttcccactctgccctggcctcgctggcccagtacgggtcaggggat
gtctccccgtcctgcaccccaccgctgacacacagccccaccgtccagagtccgctgaca
ggcaggacggtgctttaccatcgtcaccacagccagctccatagccaaccctccagcgcc
ataggctctcacagctccctcacctcacagacatcttgccctccccaggtagatgggaga
gggcagagggcagagtccctggtggatctcttcacgcaggatgtcaggactatctccact
gtttccacctcgggctcacgcagctatctgccccaagaaggcagtaataaactcgacagc
cccatcccagggcacgccacccctctgagtcactacactcccatgggatctgaacctcca
actcccatgagccaaggagcaccgacctcttcgcatcccaaccccagtcgccctgctacc
ccggccaagacctccggggcagagtacacagtctccgaactcccctccaacctgtga
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