Coregonus clupeaformis (lake whitefish): 121531584
Help
Entry
121531584 CDS
T08357
Name
(RefSeq) general transcription factor IIH subunit 1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03022
Basal transcription factors
cclu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121531584
09124 Replication and repair
03420 Nucleotide excision repair
121531584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121531584
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121531584
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121531584
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121531584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Motif
Other DBs
NCBI-GeneID:
121531584
NCBI-ProteinID:
XP_041692799
LinkDB
All DBs
Position
Unknown
AA seq
550 aa
AA seq
DB search
MTALSEEVLLVVKRVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYADIRCQKISPDGK
AKIQLQLVLHTGESTNFHFSNESTALKDRDAAKDLLQQLLPKFKKRANRELEEKNRMLQE
EPVLFQLYKDLVVSQVISAEEFWANRLSVNSVDHSLSNDKQEVGISAAFLADIRPQTDGC
NGLRYNLTSDIIESVFRTYPAVKQKYGENVPQNLTEKEFWTRFFQSHYFHRDRVNTGLQD
IFSECAKQDEKGLKSMVVQGVKNPMLDLLSLEDKPSEEGYGTNSTAPSTSNTNKTVKESS
NSTIIKRFNHHSTMVLAAGSGKKADVPNDQVSETSSTDGNSRDSDFFQPPIKKVRIQETT
EYEDLHRENRKKTVTLNLKKSDRYSHGPVPLLPQQYTTSQDIINSVNCIQHEIASYKPCL
TQVMSSSTASSAIAALSPGGILMQAGAQQAINQMVPNDVQGELKHLYTAAGELLRHFWSC
FPVNTPFLEEKVVKMRANLERFQMTKLRPFKEKIQRQYLSPNLTGHLEDMFQMAYNKFHA
WQTRRMMRKT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgacagcgttgtcggaggaggtgctgctggtggtgaagagagtccgacagaggaagcaa
gacgggacactctacctgatggcagagaggatagcctggggaccagagggaaaagaccgc
ttcaccgtcagccacctgtatgctgacatacgctgtcagaagatcagcccagacggcaag
gccaagattcagctgcagttggtcctccacacgggggagagcaccaacttccacttctcc
aacgagagcactgccctgaaggaccgcgatgcagccaaggatctcctccagcagctgctg
cccaagttcaagaagagggccaacagggaactggaggagaagaacagaatgttacaggaa
gagccggttctgttccagctttacaaggatctggtggtgagtcaggtgatcagcgctgag
gagttctgggccaatcggctgagcgtgaacagcgtggaccactccctctccaacgacaaa
caggaagtgggcatctctgcagccttcctggcggacatacggccccagaccgacggctgt
aacggcctgagatacaatcttacctctgacataatcgagtccgtcttcaggacgtaccct
gcagtgaaacagaagtatggcgagaacgttcctcaaaacctgacagagaaggagttctgg
acgcggttcttccagtcccactacttccaccgagaccgcgtcaacacgggccttcaggac
atcttctcagagtgtgccaagcaggacgagaagggcttgaagtccatggtagtccaagga
gtgaagaatccaatgctggacctgctgtcactggaggacaagccgtcagaggagggttat
gggaccaactccacagcaccttctacgtccaacactaacaagaccgtgaaggagagcagt
aactccaccatcatcaagaggttcaaccaccacagtacgatggtgctggccgcaggctcc
ggaaagaaagcggacgttcctaacgatcaggtcagtgagactagcagtactgatggaaac
tcaagggactcggacttcttccaacctccaattaagaaggtgagaatccaagagaccaca
gagtatgaggaccttcacagggaaaacaggaagaagacagtcactctgaacctcaagaag
tctgacaggtactctcatggtcctgtgcctctcctgccccaacagtacaccaccagtcaa
gacatcatcaactctgtcaactgtatacagcatgaaatagccagctacaagccctgcctt
actcaggtgatgtccagcagtacagccagttctgccatcgctgccctctccccagggggt
attctcatgcaggcaggagcacagcaagccattaaccagatggtgcccaacgacgtccag
ggggagctgaagcatctgtacacggctgctggggagctgctgagacacttctggtcctgt
tttcctgtcaacacacccttcctggaagagaaggtggtgaagatgagggccaacctggag
agattccagatgaccaagctccgccccttcaaggagaagatccagcgccagtatttgagt
cctaaccttacgggacacctggaggacatgtttcagatggcctacaataaattccacgcc
tggcaaacacgtcggatgatgaggaaaacctga
DBGET
integrated database retrieval system
