Coregonus clupeaformis (lake whitefish): 121531637
Help
Entry
121531637 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: PDZ domain-containing RING finger protein 4-like
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121531637
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121531637
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
121531637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
121531637
NCBI-ProteinID:
XP_041692914
LinkDB
All DBs
Position
19:10674664..10769653
Genome browser
AA seq
797 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGKDLSKVSHDEAVEVFRSAKDPIVVQVLRRNPVGR
GGHVGSTQEVHVVDVCTQTDITFEHIMALAKLRTTTPPVPDICPFLLSDSCHSLHTMEQE
FYEGTDYLSTLPDQQRTEEFEYEEVELCRLNSQEKLGLTLCYRTDEEEDMAIYVSEVGPN
SIAARDGRIREGDRILQINGQDVQDREEAVAVLSSEDTRNIVLLVARPEIQLEEAWLDDE
HSEFLEQLKMEMLEEQQREEMELDALQEEQEKPRGEEDDITATCSSRTQDKDSGLGMSLR
NGIDAPDHNALLTHIKRRLSQCLRDRQDCPARLDEEEQEEEDVAEDGDRFQQLLELKCQI
HNSGEYDLIYSRRSTIECSLGEPAGGVQRELRMLNDELRSIELECQNIMQAHKLRKGPGG
SQWDQGQQVFPQIVCSTPKDQSSCLGSNDSPSRSKLVDINDCPEKPEKSDKDSSSAYNTA
ESSRSTPLAMDRSPEHSLQRRMVTITNQRNLRSSLASLQTTASHSPTHRPLHWAPIPGKA
SSPNHSPYPSESDQVAPADNERSMLGNWKVKPKPPPRASQIPYLPPSHDSQHRQPSANIP
AHALHYQSYMQLIQQSSAVEYAQSQLSLLSGVKEPQXAPANEAKMEWKVKIRSDGTRYIT
KRPIRDKILRERALKIKEERSGGMTTDDDAMSEMKMGRYWSKEERKQHLVRAKEHRRRRE
FMQRSRLESLRESPQSSSEGRKEVSIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKAP
DDPRAKVHKAFLSVTTV
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctgtgcactttacagaaacgagaggaacactacaagctgctgtatgag
atcgcacaggtgaatgggaaggacctctccaaggtcagtcatgatgaggcagtggaggtg
ttccgctctgcaaaggaccccattgtggtgcaggtgctcaggaggaaccctgttggccgc
ggtggacatgttggctccactcaggaagtgcacgtggttgacgtgtgcacgcagacggac
atcaccttcgaacacatcatggccctggccaagctccgaaccaccacccctcccgtgcct
gacatctgccccttcctgctgtctgacagctgtcactctctccacactatggaacaggag
ttctatgaggggacagactacctctccaccctcccagaccaacagaggacagaggagttt
gagtacgaggaggtggagctgtgtcgactcaacagccaggagaagctgggcctgacgttg
tgctacaggacagatgaggaggaggacatggccatctacgtcagcgaggttgggccaaac
agcatcgctgcaagggacggacgcatcagagaaggagaccgcattttacagatcaatggt
caggatgtgcaggacagagaggaggctgtagcggtgctgtctagtgaagatactaggaac
atcgtactgctggtcgccaggcccgagattcagctggaggaagcgtggttggatgatgaa
cacagtgagttcctggagcaactgaagatggagatgttggaagagcaacagagagaagag
atggagctggatgcacttcaggaggaacaggagaagcccagaggagaagaggatgacatc
actgccacctgttcctccagaactcaggacaaggacagcgggctggggatgtcgttaagg
aacggcatcgacgcccccgaccacaacgccctcctaacccacatcaaacggagactctcc
cagtgtctgagggacagacaggactgtcccgcgcgtctggacgaagaggaacaagaagag
gaggatgttgcggaggatggcgatcggttccagcagctcctggagctgaagtgtcagatc
cataacagcggggagtatgacctgatctatagcagacgcagcactatagagtgtagtctg
ggagagccggccggtggtgtgcagcgtgagctccgcatgctcaatgacgagctccgcagc
atcgagctagagtgccagaacatcatgcaggcacacaagctccgcaaggggccggggggg
tcccagtgggaccaggggcagcaagtgtttccccaaatcgtctgctccacgcccaaggac
caaagctcctgcctggggagcaatgactcgcctagtagaagcaagctggtggacatcaac
gactgtccagagaagccggagaagtcagacaaggacagctcgagcgcctacaacacggca
gagagctctcgcagcacaccgctggccatggaccgctcccctgagcactcccttcagagg
aggatggtgaccatcaccaaccagaggaacctccgtagcagcctggccagcctccaaacc
acagccagccacagccccacacaccggcccctccactgggcccccatcccaggcaaggcc
agcagccccaaccacagcccctacccctccgagtcggaccaggtggcccctgcagacaac
gagaggagtatgttggggaactggaaggtgaagcctaagcctcctcccagggcctcccag
atcccttacctacccccgtcccatgactcccagcaccgccagcccagcgccaacatcccg
gcccacgctctccactaccagagctacatgcagctgattcagcagagctcggccgtggag
tacgcccagagccagctgagcctgctcagtggggtaaaggagccccagtgagcccctgcc
aacgaggctaagatggaatggaaggtgaagatccgttcggacggcacacgctacatcacc
aagagacccatcagggacaagatcctgcgggaacgcgccctgaagatcaaagaggagcgc
agcggaggtatgaccacggacgacgacgctatgtccgagatgaagatggggcggtactgg
agtaaagaggagaggaaacagcatctggtcagggctaaagaacatcggaggagacgggag
ttcatgcagcgcagcaggctggagagcctgagggaaagtcctcagagcagcagcgaagga
cgcaaggaggtcagcatcatcgaactgagccacaagaagatgatgaagaagcgcaacaag
aagatcctggacaactggatgaccattcaggaactgatgactcacggggccaaggcccct
gatgaccccagggccaaagtacataaggccttcctgtcggtcaccactgtataa
DBGET
integrated database retrieval system
