Coregonus clupeaformis (lake whitefish): 121531656
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Entry
121531656 CDS
T08357
Symbol
smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04110
Cell cycle
cclu04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
121531656 (smc1b)
04114 Oocyte meiosis
121531656 (smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121531656 (smc1b)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
121531656 (smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
121531656 (smc1b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
AAA_29
AAA_23
AAA_13
Motif
Other DBs
NCBI-GeneID:
121531656
NCBI-ProteinID:
XP_041692945
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All DBs
Position
19:complement(12243813..12265358)
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AA seq
1236 aa
AA seq
DB search
MGFLKQLDVDNFKSWRGKQVIGPFKRFNCIIGTNGSGKSNVMDALSFVMGERAATLRVKH
TRDLIHGAHIGRPVSTTASVTMRYCDDNGEELNFCRSISGDSSEYRINGRQITLAKYTDE
LEKIGIVTKARNCLVFQGAVESIAMKNPKERTKMFERISQSLELSDDYDRKKEALQKAKE
DTQFHFNKKRTATAEKKQVSSEKVEAQKYQELVDDLNQGRLQLNLFQLYHNQQGLSALSQ
TLRKRQEAVAGQKTGLEGWEQTVKAQKKEHGRFTRELQQIEKEIRGQEQTLSLRRSQYIK
AKVNTAHHLKKVDDAGGALQKGQRMRAKKKEELAEFHQELRELERAWRDYERHAQEEWAN
RGTDIQLEEEQLERYKELKELARKQGALLSQQAEKMHWEVKADHQKIEFDQQRKKEVEVS
IKHSQTQLEDFTRRADKLEEYTNTCKSSLEESRQQEEVLSAELQRGRVRGEEVNQELGEV
LGELQNARLDSQESKRQQQRNEVLENLRRLYHDTLFGRLVDLCSPIHKKYQLAVTKMFGR
YMNAIVVSSEKVARDCIRFVKEERAEPETFLPIDYLDVSPLNERLREVRGAKMMVDVVQC
SPTAPQLKKVIQFVCGNALVCETLKEARAIAFDGPERLKTVALDGTMFSKSGVISGGSSH
LRSKARRWDEKDMTKLKELKEQLTAELRGLVKLKRKESELKQIQSQAQGVQTRMKYSLTE
LDTLRKKSIPNCHAEMSRLEAELANVESQLEMQKENMEVKELEMKKLQDRINQMEDVVFS
DFCAEIGVANIREYEQEHLKQQQDVDRKRLEFESQRTCLKAQLEYEQGQLEQQRKKMKKL
EETIAKEQSGVEEHKKEEEKLLVAVEESQSKVLDLKNHLLGKKTQASDSKAQVDQMMKSL
QESSRELVKLQREVISAETALEQLRIWKHNLLLGCKIQGLPITLLSGSLDEISEVQLDSE
SLTESTCTTMDIYEREALIVIDYSGLGAELKELAGDEVDPQVERLQETVSSLEGVLQRST
APNLKALEKMREVKDKFQGVVDAFDASTKAARRSNQEFEQVKAKRFRLFSQCFEHVSVVI
DQIYKQLCRNTSAQAILNAENPDEPYLDGINYNCIAPGKRFMAMDNLSGGEKAIAALALV
FAIHSFRPAPFFVLDEVDAALDNTNIGKVTSFIREQSRESLQIIVISLKEEFYSRADALL
GVYPEFNECMFSRMLTLDLSPYPLNEENGTEREKEM
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgggttttctaaagcagttggatgtggacaattttaagtcatggcgagggaagcaagta
attggaccttttaaaaggtttaactgcattattggaacaaatggatccggtaagtcgaat
gtgatggatgccctgagcttcgtgatgggggaacgggcagcgactctccgggtgaagcac
accagggacctcatccacggagcccacattggcaggcccgtgtccaccacagccagcgtc
accatgcgctactgcgacgacaacggagaggagctcaacttctgtcggagcatatcgggg
gactcctctgagtatcgcatcaatggcagacaaatcacccttgccaagtacacagacgaa
ctggagaagataggcattgtgaccaaagctagaaactgtctggtattccagggggcggtg
gagtccatcgccatgaagaaccccaaggagcggaccaagatgtttgagcgcatcagccag
tctctggagctgtctgatgactatgacaggaagaaggaggctctgcagaaggctaaagaa
gacacgcagttccacttcaacaagaagaggaccgccaccgcagagaagaagcaggtctcc
tcagagaaagtcgaggcccagaagtaccaggagttggtggatgacctgaaccaggggagg
ctacagctaaacctgttccagctgtaccacaaccagcagggcctgagtgccctgtcacag
acactgaggaagagacaggaggctgtggctggccagaagacaggcctggaggggtgggag
cagaccgtcaaggcccagaagaaagaacatggacgttttaccagagagctgcagcagatt
gagaaggagatccgtgggcaggagcagaccctgtccctgcgtcggtcccagtacatcaag
gccaaggtgaatacggcccaccacctaaagaaggtagatgatgccggtggggccctgcag
aagggccagaggatgagggccaagaaaaaggaggagctggctgagttccatcaggagctc
cgggagctggagagggcctggagggactatgagagacatgcccaggaggagtgggccaac
cgggggactgacatacagctggaggaggaacagttggagcgctataaggagctgaaggag
ctggccaggaagcagggggccctcctgtcccagcaggctgagaagatgcactgggaggtc
aaggctgaccaccagaaaatcgagtttgaccagcagaggaagaaagaagtggaggtgagc
attaagcacagccagactcagctggaggacttcaccaggagagcagacaaactggaagag
tacaccaacacctgcaagagctccctggaggagtctcgtcagcaggaggaggtgctgtct
gcggaactgcagagggggagggtgaggggggaggaggtgaaccaggagttaggggaggta
ctgggagagctgcagaacgccaggctggacagccaggagagtaagaggcagcagcaacgc
aacgaggtcctagaaaacctacgcagactctaccatgacacactgtttggtcgtctggtg
gatctttgcagccccatccataagaagtatcagctggccgtcaccaagatgtttgggcgc
tacatgaacgccatagtggtgtcgtcagagaaggtggctcgggactgcatccgctttgtc
aaggaggagagggccgagccagaaaccttcctacccatagactacctggacgtgagtcct
ctgaatgagaggctgcgtgaggtgcgtggagctaagatgatggtggacgtggtgcagtgt
tcccccaccgctcctcagctgaagaaagtcatccagtttgtgtgtggcaacgctctggtc
tgtgagacactcaaagaggccagagccatcgccttcgacgggcctgagagactcaagacg
gtggctctggacggtaccatgttctccaaatcaggggtgatctctgggggctccagccac
ctgcggagcaaggcccggcgctgggacgagaaggacatgaccaagctgaaggagctcaaa
gaacagctgactgcagagctacgaggtctggtgaagctgaagcgtaaggagtctgagctg
aaacagatccagtctcaggctcagggggttcagacccgtatgaagtactccctcactgaa
ctggacaccctccgcaagaagagcattcccaactgccacgcggagatgtctcgcctggaa
gctgagctggccaacgtggagtctcagctggagatgcagaaagagaacatggaggtcaag
gagctggagatgaagaagctccaagacaggatcaaccagatggaggacgtggtgttctca
gacttctgtgctgagataggagtggccaacatcagggagtatgaacaggagcatctcaaa
cagcagcaggatgtagacaggaaacggttggagtttgagtctcagcggacctgtctgaag
gcccagttggagtatgaacagggtcagctggagcagcagaggaagaagatgaagaaacta
gaggagaccatcgccaaggagcagagcggcgtggaagaacataaaaaggaggaggagaag
ctactggtggcggtggaagagagtcaatctaaagtgttggatctgaagaatcatctactg
gggaagaagacccaggcttctgactccaaggcccaggtggaccaaatgatgaagagcctt
caggagagctccagagaactggtgaagctgcagagggaggttatctcagctgagacagcc
ctggagcagttgaggatctggaaacacaacctgctgctgggctgtaagatccagggcctg
cccatcacgctgctgtctggcagcttggacgaaatcagtgaggtgcagctggactcagag
tcactcacagagagcacctgcaccactatggatatctacgagagagaggccctgattgtc
atcgactactctggcctgggagctgagctgaaggaacttgcgggggacgaggtggacccc
caggtagagcgtcttcaggagacagtgtcctctctagagggggtcctacagcgctccaca
gcccccaaccttaaagccctggagaagatgagggaggtcaaggacaaattccaaggggtg
gtggacgcatttgatgccagcaccaaggcagccagaaggagtaaccaggagtttgaacag
gttaaagccaaacgcttcagactcttcagtcagtgctttgaacacgtctctgtcgtcatc
gaccagatctacaaacaactgtgcaggaacaccagcgctcaggccatcctgaatgctgag
aacccggatgagccctacctggatggcatcaattacaactgtattgctcctgggaaacgc
ttcatggccatggacaacctgtctggaggagagaaggccatcgctgccctggctctggtg
tttgccatacacagcttccgtcctgctccgttctttgtcctggatgaggttgatgcagcc
ctggataacaccaacattggcaaagtgaccagcttcatcagggagcagtccagagagagc
ctccagatcatcgtcatttctctgaaggaggagttctactctagagctgacgctctgctg
ggggtctaccctgagtttaacgagtgcatgttcagccgcatgctgacgctggacctaagt
ccctatccgctgaacgaagagaacggaacagagagagagaaggagatgtga
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