Coregonus clupeaformis (lake whitefish): 121531713
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Entry
121531713 CDS
T08357
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121531713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121531713
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121531713
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121531713
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
121531713
NCBI-ProteinID:
XP_041693041
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All DBs
Position
19:complement(3895473..3913075)
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AA seq
546 aa
AA seq
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MFSATRKKFVEGVESDYPDEGMYYSQPSMFSHRSDKDLSALSARSHVPSTAPFELEMLSS
PSPSSSGQLSQLGASLYGPQSALGFSIRGMGNNTQLNRSLTQGTQLPSHITPTTGVPTLS
LHTPPSPSRGILPMNSRNMLNHSQVGQGIGMGSSRTNSMGSPNRSSPSIICMPKQQPARQ
PFTINSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRSRREGSGN
PTPLLNPLAGRAPYEASSLHLMTSSVGMVTKPSNEPTQDFSIHNEDFPALPGPNYKDPTL
SNDDSKTNLNSTGKSTSSADGPKFPGDKTTSAQNNNQKKGIQVLPDGRVTNIPGGMVTDQ
FGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASAPCRPQDID
FHVPSEYLTNIHIRDKLAAIKLARYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKE
ERVWITRAPGMEPTLKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHVPSTFNYN
PAQQAF
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgttcagtgctacgagaaagaagtttgtagagggggtcgaaagcgactaccctgatgag
ggcatgtactacagccagccgtcgatgttctcacataggtcggacaaagacttaagcgct
ctttctgctcgatcacacgtccctagtacagctccctttgaacttgaaatgctctcgtct
ccctcaccgtcgtcatcaggtcaactgtcccagcttggtgccagtttatacggcccacag
agtgcactaggcttctcgataaggggcatgggcaacaacactcagttaaaccgcagctta
acgcaaggcacccagctaccgagccatatcacccccaccacgggggtgcccaccttgtcc
ctccataccccaccttcgccaagcagggggatcctgccgatgaactcgaggaacatgcta
aaccactcccaggtgggccagggcatcgggatgggcagcagcaggaccaacagcatgggc
agccccaaccgcagctcccccagcatcatctgtatgcccaaacagcagcctgcacggcag
cccttcaccatcaacagcatgtcaggattcggaatgaaccgaaaccaggcgtttgggatg
aacaactcgttatcaagcaacatctttaatggcacagacggcagtgaaaacgtgacaggg
ctagacctgtccgacttccctgcgttagcagacaggagtcggagggaaggaagcggaaac
ccaacgccgctactcaacccactagctggaagggccccctatgaagcctcttctcttcat
ctcatgacctcatcagttggcatggtgacgaagccatcaaatgagccgacgcaggatttc
tccatccacaacgaggacttccctgcactgcctggtcccaactacaaggaccctactttg
agcaacgacgacagcaagacaaacctaaactctacaggcaagagcacgtccagtgcagat
gggcctaagttccccggagacaagacgacctcggcacagaacaacaaccagaaaaaaggg
atccaggtgttacctgacgggcgggtgacgaacattcccgggggaatggtgacggaccag
tttgggatgatcggcttgctgacatttattcgagcggcggagacggacccgggcatggtg
cacctggcactcgggagtgacctcacaacactgggactcaacctcaactctccagaaaac
ctgtaccccaagtttgcttccccctgggcatcagcaccgtgtcgacctcaagacattgac
ttccacgtcccgtctgagtacttaaccaacattcacatacgggacaagctggcagctata
aagctggctcgttacggtgaagacctgctgttctatctgtactacatgaatggaggagac
ctgttacagctcctggcagcggtagagctcttcaaccgggactggcggtaccacaaggag
gagcgggtgtggatcacgcgggcgccgggcatggagcccacactaaagaccaacacctac
gagagggggacctactacttctttgattgtcttaactggaggaaggtagccaaggagttc
cacctggagtacgacaagctagaagagaggccccacgtcccgtctaccttcaactacaac
ccagcccagcaggccttctga
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