Coregonus clupeaformis (lake whitefish): 121531856
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Entry
121531856 CDS
T08357
Name
(RefSeq) nuclear pore complex protein Nup93 isoform X1
KO
K14309
nuclear pore complex protein Nup93
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121531856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121531856
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121531856
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
TarH
Motif
Other DBs
NCBI-GeneID:
121531856
NCBI-ProteinID:
XP_041693298
LinkDB
All DBs
Position
19:23161852..23188962
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AA seq
844 aa
AA seq
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MSCGKTRHHPISVDLRSAGVKLVAMEAEGFGELLQQAEQLAAETEAVSELPHVERNLQEI
QQAGERLRSRTLTRTSQDAADVKASILLGSRGLDIFHISQRLESLSAATTFEPLEPVKDT
DIQGFLKNERDNALLSAIEESRRRTFLLAEEYHRESMLVQWEQVKQRVLHTLLGAGEDAL
DFSQDVEPSIVSDAGVPGRSALDSVEVAYGRQIYVFNEKIVNGHVQPNLGDLCASVADSL
DDKNVSDMWLMVKQMTDVLLVPAKDTLKSRTAVDMQMAFVTQALQFLQNSYKNYTMVTVF
GNLHQAQLGGVPGTYQLVRSFLNIKLPGPLPGMQDGEVEGHPVWALIYYCLRCGDLGAAM
QVVNRAQHQLGDFKTWFQEYMNSPDRRLAPATENKLRLHYRRVLRNCADPYKRAVYCLIG
KCDIADNHGEVADKTEDYLWLKLNQVCFDDDGSSAPQDRLTLAQLQKQLLEDYGESHFSA
SQQPFLYFQVLFLTAQFEAAVAFLFRVERLRSHAVHVALVLYELRLLLKSSGQSAQLLSQ
EAGDPPMVRRLNFIRLLMLYTRKFESTDPREALQYFYFLRNEKNSQGENMFMCCVSELVI
ESREFDMLLGRLEKDGSRKPGVIDKFAGDTRAIITKVALEAENKGLFEEAIRLYELSKNP
DKVLELMNRLLSPVIAHVSAAQSNKERLKNTAVAIAERYRTQGVAGEKSVDSTFYLLLDL
MTFFDEYHAGNIDRAYDVMERLKLVPLSQDSVEERVAAFRNFSDEVRHNLSEVLLATMNI
LFTQYKRLKGATAGTPGRPHRSMEDRDSQLRSQARALITFAGIIPYRMAGDTNARLVQME
VLMN
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgtcatgtgggaaaacgagacatcatccaatcagcgtagacctcagaagtgccggagtg
aaattggttgccatggaagcggagggctttggagagctcctgcagcaggcagagcagctt
gcagcggagactgaggccgtgtctgagcttccccatgttgagaggaaccttcaggagatc
cagcaggctggagagaggctacgctcccgcaccctaactcgaacatcacaagacgctgct
gacgtaaaagcctccatcctcctgggttccagaggcctggacatcttccacatctcccag
cgtctggagagcctgagtgctgccaccacctttgaacctctggagccagtgaaggacact
gacatccagggctttctgaagaatgagagggacaatgcgctgctctctgccatcgaggag
tcgcgtcgcaggacgttcctcctggcagaggagtatcaccgtgagtccatgctggttcag
tgggagcaggtgaagcagagagtactgcacaccttgctgggagcaggggaggatgctctg
gacttcagccaagacgtagagcccagcattgtgagtgacgcaggagttcctggacggagt
gctcttgacagcgtggaggtggcctatggacgacagatctacgtttttaatgagaagata
gtgaatggacatgtccagcccaacctgggagacctctgtgcctcagtggcagacagcctg
gatgacaagaatgtgtcagacatgtggttaatggtgaagcagatgacagacgtgctgctg
gtcccagccaaagacacgctgaagagccgcacagccgtggacatgcagatggcgtttgtt
acgcaggccctgcagttcctgcagaacagctacaagaactacaccatggtgacggtgttt
gggaaccttcaccaggcccagctgggaggagtccctggcacctatcagctggtgcgcagc
ttcctcaacatcaaactgccagggcctctgccaggcatgcaggatggcgaggtggagggt
cacccagtctgggctctgatctactattgcctgcgctgtggggacctgggggctgccatg
caggtggtgaaccgggctcagcaccagctgggagacttcaagacctggttccaggagtac
atgaacagccctgacagacgcctggcccccgccacagagaacaagctgcgtctccactac
cgcagagtgctgaggaactgcgctgacccctacaagagggccgtctactgccttatcggg
aagtgtgacatcgcagacaaccatggagaggtggccgacaagaccgaggactacctgtgg
cttaagctcaaccaggtgtgcttcgatgacgacggcagcagtgctcctcaggacagactg
acattggcccagctacagaaacagcttctagaggactacggagagtcccacttctcggcc
agccagcagccgtttctgtacttccaggtgctgttcctcacagcccagtttgaggctgct
gtggccttcctgttccgggtggagcgtctacgtagtcatgctgttcacgtggctctggtt
ctctacgaactgcggctgctactcaagtcatcaggacagagcgcacaactgttgagtcag
gaggctggggacccgcctatggtgcgacggctcaacttcatccgtctcctcatgctctac
acgcgcaagtttgagtccacagacccccgggaggctctacagtacttctacttcctacgg
aatgaaaaaaacagccaaggagagaacatgttcatgtgctgtgttagcgagctggtgatt
gagagtcgagagtttgacatgcttctaggaagactggaaaaagatggcagcagaaagcct
ggagtgattgataaatttgccggagacactcgagccattatcacaaaagtggctctggag
gctgagaacaagggcctgtttgaggaagctatcagactgtatgagctgtccaagaatcca
gacaaggtcttagagctgatgaacaggctgctgagtcctgttatcgcccatgtcagcgct
gcccagtccaacaaggagagactgaagaacactgctgttgccatcgctgagcggtaccgg
acccagggtgttgctggagagaagtctgtggacagcactttctacctgctgctggacctc
atgaccttctttgatgagtaccatgctggaaacatagaccgggcctacgatgtgatggag
agactgaagctggtccctctgagtcaggacagtgtggaggaaagggtcgctgcattccgc
aatttcagtgatgaggtcaggcataatctgtcggaggtgctcctggccaccatgaatatc
ctgttcacgcagtacaagcgcctgaagggggccacagcaggaacccctggtcgaccacat
agatccatggaggacagagactcgcaactgcgcagccaagcccgtgcactgatcacgttt
gctgggattatcccgtaccgcatggcaggcgacaccaatgcccggctggtgcagatggag
gtcctgatgaactga
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