Coregonus clupeaformis (lake whitefish): 121531865
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Entry
121531865 CDS
T08357
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121531865 (ctcf)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121531865 (ctcf)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121531865 (ctcf)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121531865 (ctcf)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_7th_ZNF462
zf-C2H2_REST
Zf-C2H2_ZNF451
zf-met
zf-C2HE
zf-C2H2_6
Teflon_C
Zf-C2H2_ZNF451_C
zf-C2H2_15
zf-C2H2_CASZ1
DUF8106
Zn_ribbon_DUF2089
Motif
Other DBs
NCBI-GeneID:
121531865
NCBI-ProteinID:
XP_041693319
LinkDB
All DBs
Position
19
Genome browser
AA seq
782 aa
AA seq
DB search
MDGGPTDVVVVAKDCITYEGDEVVADLLQQAAEGVMDQQPEGVAGLDPQQLVEEVNVEMM
VMDSLDPALLQMKTEVIDAPVATAHEATVTTVDETQIITLQVVNMDEQQLGGLGELQLVQ
VPVSAVPVTQATVEALQGTFVDTTAMPKDGNPVICHTLPLPEGFQVVKVGANGEVETVEQ
DEHQEEQQVQPEEEELHCEHQPEDPQWAKDPDYQPPARKTTKKAKKSKLRYNTEGDKDNM
DVSVYDFEEEQQEGMLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNL
DRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCQDCDMAFVTSGELVRHR
RYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTH
SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS
FIEQGRKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYCCRQERHMLMHRRTHTGEK
PYACSQCEKTFRQKQLLDMHFRRYHDPNFVPTAFVCTKCGKAFTRRNTMARHAENCNGDP
SEGENGSPPKRGRGGRKRKMRSRKDDDDDDDSEDNADPELDDIDEEDEEAEAALLEEEEE
EMELEQAPPTKPIPAPVEPPVKRKRGRPPKNAPKPSPPAKASKAAPKVKAAAAAAIIQVE
DENTGAIENIIVKKEPEAEQAAPEVVVEQPEEAGVETVELPVADAAPNGDLTPEMILSMM
DR
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggacggaggaccaactgacgttgtggttgtggccaaggactgcatcacctatgagggg
gatgaggtggtggcagacctgctccagcaagcagcagagggggtaatggaccagcagcca
gagggagtggctggtctggatccccagcagctggtggaggaagtcaatgtggagatgatg
gtaatggactccctggacccggccttgctgcagatgaagactgaggtgatagacgcccct
gtggctacagcccacgaggccacggtcaccacggtggatgagacccagatcatcactctg
caggttgtcaacatggatgagcagcagctgggaggcctcggggagctacagctggtccag
gtccctgtctctgctgtccctgtcacccaggccactgtagaggcactacagggcaccttc
gtagacaccacggccatgcccaaagatggaaatcctgtgatctgccacaccctgcccctg
ccagagggcttccaggtggtgaaggttggtgcgaatggtgaggtggaaacagtggagcaa
gatgagcaccaggaggagcagcaggtccagcctgaggaggaggagctgcactgtgagcac
cagcctgaagatccacaatgggccaaggaccctgactaccagcccccagccaggaagacc
accaagaaggcaaaaaagagcaagctgcgctacaacacagagggggacaaagacaacatg
gacgtgtccgtgtacgactttgaagaggagcagcaggaagggatgctctccgaggtcaac
gcagagaaggtggtgggcaacatgaaaccccccaaacccaccaaaattaagaagaagggt
gtgaagaaaacattccagtgtgagctgtgtagctacacctgtccccgccgctccaaccta
gatcgacacatgaagagccacacagatgagaggccccacaagtgccatctgtgtggaagg
gccttcaggaccgttaccctgctgaggaaccacctcaacacacacacaggtaccagacca
cacaagtgtcaagattgtgacatggcctttgtgaccagtggagagctggtccgtcatcgt
cgctataagcacactcatgagaaacccttcaagtgctccatgtgtgactatgccagtgtg
gaggtgagcaagctaaagcggcacatccgttcccacactggggagcgtccgttccagtgc
agtctgtgcagctacgccagcagagacacctacaagctgaagagacacatgaggacacac
tcaggagagaagccgtacgagtgctatatttgccatgcccgtttcacccagagtggaacc
atgaagatgcacatcctgcagaagcacacagagaatgtggccaagttccactgcccccac
tgtgacaccgttatcgcccgaaagagtgacctgggcgtccatctgcgtaaacagcactcg
ttcattgagcagggcaggaaatgtcgttactgtgatgctgtgttccacgagcgctacgca
ctcatccagcaccagaagtcccacaagaacgagaaacgcttcaagtgtgaccagtgtgat
tactgctgcagacaggagcgccacatgctgatgcacaggcgcacgcacacaggagagaag
ccttacgcctgtagccaatgtgagaagaccttccgtcagaagcagctcctggacatgcac
tttcggcgctaccatgaccccaactttgtgcccaccgcctttgtgtgcaccaagtgtggc
aaggccttcactcgcaggaacaccatggccagacatgcagagaactgtaacggggatcct
agtgaaggagaaaacggatccccaccgaagagaggacgaggtgggaggaagaggaagatg
cgctcaaggaaggacgatgatgatgacgacgacagtgaggacaatgctgatcctgagctg
gatgacattgatgaagaggatgaggaggccgaggcggcactgctggaggaagaggaggag
gagatggagttagagcaggctccacccaccaaacctattcccgcccctgtagagccacct
gtcaagaggaaacgcggcagaccccccaagaacgcccccaaaccctccccgcccgccaaa
gccagcaaggctgcccccaaagtcaaggctgctgcagcagcagccatcatccaggtggag
gatgagaataccggcgccatagagaacatcatagtgaagaaggagccagaggctgaacag
gctgccccagaggtggtggtggagcagccagaggaggcaggggtggagacggtggagctg
cctgtagcagatgctgcccccaatggagacctcacccctgagatgatcctcagtatgatg
gaccggtga
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