Coregonus clupeaformis (lake whitefish): 121531876
Help
Entry
121531876 CDS
T08357
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121531876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121531876
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121531876
mRNA degradation factors
5'-3' decay
Decapping complex
121531876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EDC4L
WDR55
NBCH_WD40
Pdc1_Ge1
IBN_N
Motif
Other DBs
NCBI-GeneID:
121531876
NCBI-ProteinID:
XP_041693335
LinkDB
All DBs
Position
19:complement(32561907..32625413)
Genome browser
AA seq
1434 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSVDASPSENQSTTSFNGELNGLLGADFIGAGDR
STMAESTGPNSENMNTQDCQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAV
TDLAFAHLDSTLLGCVDEAGNLVIWQLTCHSSKILDQVIVHIRRPEDTPLNSNRRLIWCP
FILEDNEENPEDASQTLALLHEDRAEVWDLEILRSNNNTWPVDATDLKDGVITIKGHTDR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGLDQPSPLPGFFHRCLHEWQPHNGNPLSCL
LFCDNHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPCLKA
SLDLSAECLILSDVQRKVLYVMELLQDQEKGHASFTAVSEFLLTHPVLSFGVQDVSHSHL
CHSEVLPPDEESESMTADGNQGPMESKAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLF
LPHSDSNDGFGFSDHLTDMSVEGLSSDKDSGCGSKNDLHKIPALADFLSPSGTVAMPKLM
TPDAFMTPSASVPASPGSSASSLTIVTAMSSNSDSCARGGEELNQSPKMSVESSSSSSLT
LNVSTSSSILISGLGDNMPMYPLPQETTPHTLMFPLTYPLRPLQGLPSPNPPLSLDPQVI
EPMLIQQASPTRARSPDVISSASTAMSQDIPEIASETLQRGLGGVSGAESREPLPALHTD
SMASAASALHLLSPRNRNSDHGHLPLELGAVAGAVEAEQRLSNTPSLLENALSQENAAAA
AASCLDNSVSHPWPAAPDITRETRNSLRDNGLGDCSREEMKDRHMSSPYHRRTYHLTQND
SQDASAEQSDHDDEVASLASSSGNCGVRSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDAS
HASHASQSRQPEHQHQQINPDVQEELLILLRNQQRELAELRQSQLELLQRVTGHMDAVQS
SVLAHVEHVMVSQQEHEQRRMERILAEGHNCNQQLQEHLSQQLGQTLSNTLCNRLDKTLR
EEMKKTVPPTITKSLEPVTAQMSNTIAAKLTAVEAALKENVSKVVKSKNTTDAIGRAAAE
AMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQGTHEYIQQLETHVKNRKQHEQ
EAQDPMIGQLQQMIDTFQNSTDQLATTITASVRSEVQHQLHMTVGNLQDSILTQVQRIVK
GEVSMAMKEQQVAVNSSIMQAMRSAAGTPVPNAHLDYQAQQASILQLLQQGQLNQAFQQA
LSASDLNLVLYVCETIDSQQVFGQHPCPLIQPVLLSLIQQLSTNLATRSELKISYLEDAV
MNLDHGDPVTRDHMSAVLSQVRQKLFQFLQQDPHSPLSKRARRLVMMLQGLVNH
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgatatatta
aaactggaccgacccgggaacagcgttgacgcatctccaagtgagaaccaaagcacaaca
tctttcaatggtgaattgaatggacttctgggagcagactttataggagctggcgacagg
tcaaccatggctgaatccacaggccctaattcagagaacatgaacacccaagactgtcag
atcatctgcctctctggggatgatggctccacttgcattcccatcacatccaacaatgtt
gaaattgtggccagtcgagactcaagcattgacagcaaagcccgtggcagcaacaaggta
aaaatccagcctgtcgccaagtacgactgggagcacaagtattactacggcaacctcatt
gcagtctctaacgcatacctggcatatgccatccgaggagcaaacaaccaggccatgatc
cgtgtgttgagcttgggctcggcagagcgcacactgctgaagggcttcactggtgcagtc
acagacctggccttcgcccatctggactccacgctgctgggatgtgtcgacgaggccggc
aacctggtcatctggcagctcacctgccacagtagcaagatcctggatcaagttattgtc
cacatccggaggcctgaggacacgcctctgaactccaataggaggttgatctggtgtccc
ttcatcctagaggacaatgaagagaaccctgaggatgccagccagaccctggccctgctg
catgaagacagagctgaagtgtgggatctggagatcctccgcagcaacaataacacctgg
ccagtagatgccactgacctgaaggacggagttataactataaaaggacatacagatcgc
atcagtgaaggtgccctgtctccggatggcacagtcttggccacagccagtcatgatgga
tatgtaaagttctggcaaatctacattgaaggactggaccagccaagtcctctccccggc
ttcttccacagatgtctacacgagtggcagccccacaacgggaaccccctttcctgcctg
ctgttctgtgacaaccacaagaaacaggacccagatgttccattctggcgctttcttatt
actggagctgatcagaaccaggaattgaagatgtggtgcacagtgtcatggacctgcctg
cagaccatcaggttctctccagacccgttcaactcatcagtcctgccctgtctgaaggcc
agtctggacctgtctgcagaatgcctcatcctcagcgatgtacagagaaaggtgttgtat
gtgatggagttgttgcaggaccaggagaagggccatgccagcttcacagccgtgtcagag
ttcctgctcacacaccctgtgcttagcttcggtgttcaggatgtcagccacagccacctg
tgccactcggaggtccttccgccagacgaggagagcgagagtatgactgcagatggcaac
cagggcccaatggaatccaaagctgggatccaaatcaagctatactgtgtccacacaaag
tcccttcaagatgtgcagatctggttccagccaaaccttggctctggctcctccttgttc
ctgcctcactccgactcaaacgatggctttggtttttcagatcacttgacagacatgagt
gtggaaggtttgagctctgataaggattctggatgcggctccaaaaatgatctccacaag
attcccgctcttgctgacttcctgtccccctccggcactgttgctatgcccaagcttatg
acccctgacgccttcatgacccccagtgcttcggtcccagcctccccaggcagcagtgcc
agcagcctgaccatagtgacagccatgagcagcaactctgacagttgcgccaggggagga
gaggagctgaaccagagccctaagatgtctgtggagagcagcagtagtagcagcctgact
ctcaatgtgagcaccagcagctccatcctcatctcaggcctaggggacaacatgccgatg
taccctcttccacaagagaccactcctcatacgctcatgttccccctcacctaccccctc
cgccctctacaggggcttccctctccaaacccgcccctctcgctggaccctcaggtcatt
gagcctatgctgatccagcaggcttctcctacccgggcccgctctccagacgtcatctca
tctgcctccacggccatgtcccaggacattcctgagatcgcctctgagacgctgcagcga
ggcctggggggggtgtctggagctgaatctcgagaacctctcccagccctccacacagac
agcatggcttctgcagcctcagctcttcaccttctctctccacgaaaccggaactctgac
cacggccacctgcccctggagctgggtgctgtagcaggagcagtggaggcggaacagagg
ctcagtaacaccccctcactactggagaacgccctgtcacaggagaatgctgctgctgca
gctgcctcctgcttagacaacagcgtgagccacccctggcctgcagctcctgacatcaca
cgggaaacacgcaacagcctgcgggacaacggcctgggagactgctcgagggaggaaatg
aaggacagacacatgtcctctccataccacagacgcacctaccacttaacccagaatgac
agtcaggacgccagtgcagaacagagtgaccatgatgatgaggtagccagtctagcatcg
tcttcagggaactgtggggtcaggtcgtctcaaagactgccagtgaaggagtggaagagt
tctcccagaggctcccctaaactcaagaggaagagtaaaaaagacgacggggatgcatct
catgcctctcatgcctctcagtccaggcagcctgagcatcaacatcagcagattaaccca
gacgtgcaggaagagctgctgattttgctgcgtaaccagcagagggagctagcggagctc
cgtcagagtcagctggaactgctgcagagagtgacaggccacatggacgccgtgcagagc
tctgtcttagcccatgtagagcacgtcatggtcagccagcaggagcacgaacagaggaga
atggagagaatcctagcagagggacacaactgtaaccagcagctccaggagcatctctcc
cagcagctgggtcaaactctcagtaacaccctttgtaaccggctggacaagactctccga
gaggagatgaagaagactgttcctcccactatcaccaagagtctggagcctgttactgcc
cagatgagtaacaccatcgctgctaagctgacagctgtggaggcagcactgaaggagaac
gttagcaaagtcgtgaagtcaaagaacaccacagatgctatcggccgggcagctgccgag
gcaatgcaggggcctatccaggctgcctacaaggatgctttccagagcattgtgctgcct
gtgtttgagaggggctgccagtctatgttccagcagatcaatgatagcttcaagcagggt
acccatgagtatatccagcaactggagacccatgtgaagaacaggaagcagcatgagcag
gaagcacaggatcctatgattggccagctgcagcagatgattgacacgttccagaactca
acggatcagctggccaccaccatcacagcaagtgtccgctctgaggtccagcaccagctc
cacatgacggtgggaaacctgcaggactcgatcctgacccaggtgcagcgcattgtgaag
ggtgaggtgagcatggccatgaaggagcagcaggtagctgtgaactccagcatcatgcag
gccatgcgctctgctgcaggcacgcccgtccccaacgcacacctggactaccaggcccag
caagccagcatcctgcagctgctacagcagggacagctcaaccaggccttccaacaggcc
ctgtcagcctctgacctgaacctggtcctgtatgtgtgcgagaccatcgactcccagcag
gtgtttggccagcatccctgccccctcatccagccagtgctgctgtccctcatacagcag
ctgtccactaacctggccacacgctcggagctcaagatcagttacttagaggatgctgtg
atgaacctggaccatggtgatccggtgacgagggaccacatgagtgcggtgctgtcccag
gtccgacagaagctgttccagttcctgcagcaggacccacacagtcctctcagcaagaga
gcccggcgcctggtgatgatgcttcagggcctggtcaatcactag
DBGET
integrated database retrieval system
