Coregonus clupeaformis (lake whitefish): 121531901
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Entry
121531901 CDS
T08357
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 2-like isoform X1
KO
K20091
chromodomain-helicase-DNA-binding protein 2 [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121531901
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121531901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
121531901
NCBI-ProteinID:
XP_045060896
LinkDB
All DBs
Position
19:complement(40420041..40457876)
Genome browser
AA seq
1819 aa
AA seq
DB search
MKNKNKKQENEGSTQSNASSNSASEDSNHSGSESGSQSESEQGRERRRSHHSGESNSSSE
SGSQSGSQSESQQALAEVNDKPPVKKKDNLADVKKMWEEHPDVYGVRRSNRSRQEPARLN
IGAGGSSDSEGECPKRKVPRQKKKENTWKGDDSDDDDDDDDEEEEEQEDDDASSADSEHE
EKKVRSRRLPARRPQTKSSTIKKQQPPKGRKTRKQESSVEEDDDDDDDEDTPKRQTRRRL
AAKVSYKEDQNDFETDSDDLIEMEGAEVEPEDDSETIEKIMDTRTGKKGACGASTTQYAV
EENGDPGADFDPEKDEGETHYLIKWKGWSYIHNTWESIDSLPQQKVKGLKKLENFKKKNS
ELNAWLNKASPEDSEYYNCQQELTTDLNKQFHILERVIATKTGKTQGPSDFPSHSHKNAS
SSNEPEYLCKWMGLPYSECSWEDGALLGKKFQHCIDSFTNRNSSKTVPSKDCKVSEVLKQ
RPRFVALKKQPSYIGDENLQLRDYQLDGLNWLAHSWCRCNSVILADEMGLGKTIQTISFL
SYMFHQHQLYGPSLVVVPLSTLTSWQREFDTWAPDMNVVVYLGDVMSRKSIRDYEWVCHQ
TKRIKFNALITTYEILLKDKAVLGNINWAFLGVDEAHRLKNDDSLLYKTLIEFRSNHRLL
ITGTPLQNSLKELWSLLHFLMPDKFENWEDFESEHGKGTDNGYQSLHKVLEPFLLRRVKK
DVEKSLPAKVEQILRVDMSAVQKQYYKWILTRNFRALQKGTRGSSSGFLNIVMELKKCTN
HGFLIKQPEEECDTQQEHLQALVRGSGKLVLLDKLLTRLRERGNRVLIFSQMVRMLDILA
EYLALKRYPFQRLDGSIKGEIRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVI
FDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMD
TTGRTVLDNNSGNSNSNPFNKDELTAILKFGAEDLFKEAEGEETEPTEMDIDEILRLAET
RESDQGSSATDELLSQFKVANFSNMEESAPDLVERTVPDWDDIIPEDQRRKLEEEQKQKE
MEDVYMLPRSRSSNKRAQANDSDSDVGSKLKHRSSGSESETDDSGDDKKPKRRGRPRARK
NNVEGFTDAEIRRFIKAYKKFGAPLERLECIARDSELVEKSQADLKRLGELIHNSCVTAV
QEHEEHLRENPSEAKGPGKRRGINIKISGVQVNAKSIIQHEEEFEPLHKVVPANPAERNK
FQLTCRVKVPHFDVDWDLQDDTQLLLGVYEHGYGNWDLMKTDPDLKLADKILPGDPEKKP
QGKQLQGRTDYLLKMLKKEVDSNDVTKEEAKVRKRKPRVKKENKAPKDEQGNDISSPRLS
DNPSEEGEVRDDGTEKTPTKKRQKKKDNKENKEKQGTPKKEKEVDKDKKRPKTKKEKAKG
AKGKKPQGPVHITAGSDPVPIGEDDDELDQETFSICKERMRPVKKALKQLDKPDEGLSVQ
EQLQHTRTCLLKIGDRITECLKAYSDPEHVKTWRRNLWIFVSKFTEFGARKLHKLYKMAQ
KKRSQEEEKEHRKKGDDPSGRKKPFRAEPSGSSRDSTSTQPSSKSHPGMPRPSPTSPHGH
HREGYNKSNNRHFGNDDRGDWQRDRKYNYPGNSNQSWQGERHHPYDAHRYKDHHYGDRRP
REDSYRSSSSSYRSGSSNSPRKRPYDQYDNDQDHRDRRAYYDRHPDAKRRRGDDFRPPQD
FRSGGGHPQDFRGRMLEQRGPTGPEHFTRPYPDNKPPPLLDPRSSQAQKSPQDSRSPTAE
RTAEQKAAGADLNWNNRMT
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atgaagaataagaataaaaagcaagaaaatgaaggttcgactcaaagcaacgcatcaagc
aattcggcctcagaagactcgaaccactctgggtcggagtctgggagtcagtcggagagt
gaacagggcagggagaggagaagatcgcaccactctggagagtccaacagttcctctgaa
tctgggagccagtccgggtctcagagtgaatcccagcaggccttagcagaggtcaacgac
aaaccaccagttaaaaagaaagacaatctggcagatgtaaagaagatgtgggaagagcat
ccagatgtctatggggtcaggcgatcaaatcgcagtaggcaagaacctgctcgtctcaat
attggagctgggggtagcagtgactcagaaggtgaatgtcctaaaagaaaagtaccacga
caaaagaagaaagaaaatacctggaaaggtgatgactcggatgatgatgatgatgatgat
gatgaggaggaggaggagcaggaagatgatgatgccagcagtgcagacagtgagcatgaa
gagaaaaaagttagatccagacgacttcctgctagaagaccacagaccaaatcatctaca
atcaaaaaacagcagcctccgaagggaaggaaaaccaggaaacaagagtcatctgtggag
gaagatgatgatgacgacgatgatgaagataccccaaagagacaaacccggcgaaggctg
gctgccaaagtcagttacaaggaggaccagaatgactttgagacggattctgacgacctg
atagagatggagggagctgaggtagagccggaagatgacagtgagaccattgagaagatc
atggacaccagaacaggcaaaaaaggagcctgtggtgcttccactacccagtatgctgtg
gaggaaaatggggatccaggagcagactttgaccctgagaaggatgaaggagagacccat
tacctgatcaagtggaaaggctggtcctatatccacaacacctgggagagcatcgactcc
ctccctcaacagaaggtcaagggactcaagaaactagagaacttcaagaagaaaaacagt
gagctcaatgcttggttgaacaaagcatcccctgaggattcagaatactacaactgccaa
caagagctaaccactgacttaaataagcagttccacattttggaaagagtcattgcgact
aaaaccgggaagacacagggaccctctgatttcccctctcacagccacaagaatgcgtcg
tcgtccaatgagcctgagtacctgtgtaagtggatgggcctgccctattcagagtgcagc
tgggaggatggagctctgctggggaagaagttccagcactgtatagacagcttcaccaac
aggaactccagcaaaacagttccctccaaagactgcaaagtgagtgaggtgttgaaacag
aggcccagatttgttgcactaaagaagcagccatcgtacattggggatgagaacctgcag
ctgagagattaccagctagatggactgaactggctggctcactcttggtgcaggtgcaat
agtgtgatcctggctgatgagatgggtctggggaaaaccatccagaccatctcgttcctg
tcctacatgttccaccagcaccagctgtatgggccctccctggtggtggtgcccctgtcc
accctcacctcctggcagagagagtttgacacctgggcccccgacatgaacgtggtggtc
tacctgggagatgtgatgagcagaaaatcgatccgtgactatgagtgggtatgccatcag
acaaagagaataaagttcaatgcacttataaccacgtatgaaattctactgaaagacaag
gcagtgttggggaacataaactgggccttcctgggtgtggacgaagctcacaggctgaag
aatgacgactccctgttgtacaaaaccctgatcgagttccggtccaaccacagacttcta
atcacagggacgccactgcagaactctctcaaagagctgtggtcccttctgcacttcctc
atgcctgacaagtttgagaattgggaagattttgaaagcgagcatggtaaagggactgac
aatggctaccagagcctccacaaagtccttgagcccttcctcctgaggcgtgtcaagaag
gatgtggagaaatccctgcctgctaaggtagaacagatccttcgtgtggacatgtccgcc
gtgcagaagcagtactacaagtggattctgaccaggaacttcagagccctgcagaaaggc
acccgaggcagctcctctggtttcctcaacatcgtcatggagctaaagaagtgcactaac
catggtttcctcatcaagcagcccgaggaggagtgtgacactcaacaggagcacctgcag
gcgttggtgaggggcagtgggaagctggtgctactggacaagctgctgaccagacttcgg
gagaggggcaaccgagtcctcatcttctcccagatggtgcggatgttggacatcctggct
gagtacctggccctgaagcgctacccattccagcgcctggacggttccataaagggagaa
atacgaaaacaggcacttgaccactttaatgctgaaggctctgaggacttctgttttctg
ctatccaccagggctggagggctggggatcaacctggcatctgcagacactgtggtcatc
tttgactctgactggaatcctcagaacgacctgcaggctcaggccagggctcacaggatt
ggccagaagaaacaggtgaatatctatcgcttggtcacaaaaggatctgtggaggaagac
attattgagagagccaagaagaagatggttttggaccatcttgttattcagagaatggac
accactggtcgaactgtactggataacaactctggaaattctaattccaacccattcaac
aaagatgagttgactgccatcctgaagtttggagctgaagatcttttcaaagaggcagag
ggagaggagactgaacctacggagatggatattgatgagatcttgcggttggctgaaacc
agagaaagcgaccagggatcaagtgccacagatgagcttctctctcagttcaaggtggcc
aacttctccaacatggaggagagtgctccagacctggtggagcggacggtgcctgactgg
gacgacatcatccctgaggaccagaggcggaagctggaggaggagcagaagcagaaggag
atggaggacgtctacatgctgcccaggagcaggagctccaataaaagggcccaggccaac
gacagtgacagtgacgttggctccaagctgaagcaccgctcttcaggctctgagagcgag
actgacgacagcggtgatgacaagaagccaaagaggagaggcaggcccagagcccgcaag
aacaacgtggagggtttcactgatgcagagatccgcaggtttatcaaggcttacaagaaa
tttggagctccgcttgaaaggctagagtgcattgcccgggactctgagctggtggaaaaa
tctcaggcagacctgaagagactgggagagctgatccacaacagttgtgtgacggctgtc
caagagcacgaagagcacctcagagagaaccccagtgaagccaaaggtcctgggaagcgc
agaggtataaacatcaagatctcaggagtgcaggtcaatgccaagtccatcattcagcat
gaggaggagtttgagccactgcacaaagttgtgccagctaatcctgctgagagaaacaag
ttccaactgacctgcagagtgaaggtgcctcactttgacgtggactgggatctgcaggat
gacactcaactgttgctgggggtctatgagcatggctacggcaactgggatctgatgaag
acagatccggatctcaaacttgcagacaagattctccccggtgacccagaaaagaaaccc
caagggaagcagttgcagggcagaacagactaccttctgaagatgttgaagaaagaagtg
gacagtaacgatgtcactaaggaggaggccaaagtgaggaagaggaagcctcgggtgaag
aaagagaacaaggcccctaaagatgagcagggcaatgacatctcctcccctcgcctgtca
gacaacccctccgaggaaggggaggtgagggatgacgggacagaaaaaactcccacaaag
aagagacagaagaagaaggataacaaagagaacaaagaaaaacagggaactcctaaaaaa
gagaaagaggtggacaaagacaaaaaacgtcccaagacaaaaaaagaaaaggctaaagga
gccaaagggaagaagccccaggggccggtccacattactgctgggagtgaccctgttccc
attggagaggacgatgacgagctggaccaggagaccttcagcatatgtaaggagcgcatg
aggccggtgaagaaggccctgaaacagctggataagcctgacgagggcctgtctgttcag
gagcagctccaacacacacgcacctgcctgctgaagataggagaccgcatcactgagtgc
cttaaagcctacagcgacccagagcatgtcaaaacatggcgtcggaatctctggatattt
gtgtccaagttcacggagttcggcgcgaggaagcttcacaagctgtacaagatggctcag
aagaagcggtctcaggaggaggagaaggagcatagaaaaaagggggatgacccgtcgggc
aggaagaagcctttcagagcagagccgtcaggttccagtcgagactccaccagcacccag
ccatcgtctaagtctcatccaggcatgcctcgcccctctcccacatccccccatggtcac
cacagagaaggctacaacaagtccaacaacagacactttggaaatgatgatcgaggagat
tggcagagagatcgtaaatacaactaccctggaaatagcaaccagtcctggcaaggcgag
cgacatcatccatatgatgcccatcggtataaggaccatcactatggcgaccgtcgtcca
cgtgaagactcctaccgcagcagctctagtagttaccgtagcggtagcagcaactcccct
cggaagaggccatatgaccagtatgacaacgaccaggatcacagggaccggcgggcatat
tacgacagacatccagacgcgaagcggagacgcggcgatgacttccgtcctccccaagac
ttcaggagtggaggaggccatccccaggacttcagggggaggatgctggagcaaaggggg
ccgacagggccagaacacttcacccggccctatccagacaacaaaccccctcccctgctg
gacccacggtcctcacaggctcagaagtccccccaggactcacgctcgccaaccgcagag
cggactgcagagcagaaagcagctggggctgatttaaactggaacaacaggatgacatga
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integrated database retrieval system
