Coregonus clupeaformis (lake whitefish): 121532017
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Entry
121532017 CDS
T08357
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121532017 (lingo1a)
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
121532017 (lingo1a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
ig
Ig_2
LRR_9
LRRNT
LRR_EndoS
LRR_Zer-1
Ig_C17orf99
LRRCT
Motif
Other DBs
NCBI-GeneID:
121532017
NCBI-ProteinID:
XP_041693587
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Position
19:complement(21111515..21378076)
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AA seq
615 aa
AA seq
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MGAREANGHSYLVACWQPILILMLGTVLSGSTTGCPSRCECNAQERSVICHRKKLMSVPE
GIPTETRLLDLSKNRIKTINMDEFATYPNLEELELNENTISAIEPGAFNNLYGLRTLGLR
SNKLKLIQLGVFTGLSNLTQLDISENKIVILLDYMFQDLYNLRSMEVGDNDLVFISHRAF
HGLSSLEQLTLEKCNLTSVPTEAFTHLHSLIFLRLRHLNIYIIKDYSFKRLYRLKVLEIA
NWPYLDTMTSNCLYGLNLTSLTITNGNLTSIPYVALRHLVYLRFLNLSYNPIHTIEGNKL
HDLLRLQEFHLVGGRLAMIEPYSFRGLNYLKIFNVSGNALSTLEESAFHSVGNLETLALY
DNPLACDCRLLWVFRRRWRLNFNRQQPTCASPEFVQGKELKDFPDVLQPNYFTCRKSRIR
DRKAQQKFVDEGTTVHFVCQADGDPAPVIMWLSPQKQFITTKTIGRLTVFPDGTLEVRYA
QIQDNGTYVCIASNAGGNDTSLAHLHVHSYSPDWPHQPNKTFAFISNQPNENGANGTRTN
VPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGATKHNIEIEYVPRKSDAGMS
SSNADAPRKFNMKMI
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgggggccagggaagcgaatgggcacagctacctggtggcttgctggcagcccattctg
attctgatgctgggcaccgtactgtccggttccaccacaggctgcccgtcccgctgcgag
tgcaacgcccaggaacgctcggtcatatgccaccgcaagaagcttatgtccgtccctgag
ggcatccccacagaaacgcggctgctggacctcagcaagaaccgcatcaagaccatcaac
atggatgagttcgccacctaccccaacctggaggagctggagctcaacgaaaacaccatc
tctgccatcgagcccggcgccttcaacaacctgtacggcctgcggacattggggctgcgc
agcaacaagctcaaactcatccagctgggtgtgttcacgggcctcagcaacctcacccag
ctggacatcagtgagaacaagatagtcatcctgctggactatatgttccaagacctatac
aacctgcgctccatggaggtgggcgacaatgacttggtgttcatctcccaccgggccttc
catggcctcagcagcctagagcagctgactttggagaagtgcaacctgacctcggtgccc
accgaggccttcacccacctccatagtttgatctttctcaggctgcgccacctcaacatc
tacattattaaggattactccttcaaaaggctctaccggctgaaagtgctggagatcgcc
aactggccctacctggacaccatgacctcaaattgcctctatggactgaacctcacctcg
ctgaccatcaccaatggcaacctgacctccatcccatacgtggctctccggcacttggtc
tacctacggtttctgaatctgtcctataaccccatccacactattgaggggaataagctc
catgaccttctgaggctccaggagtttcacctggtcgggggcaggctggctatgatcgag
ccctactcgttccgaggcctaaactatctgaagatcttcaatgtgtctggcaatgccttg
agcactttggaggagtctgcgttccactcggtaggcaacctggagactcttgcgctttac
gacaaccccttggcctgtgactgtcggctgctgtgggtgttccggagacgctggaggctc
aacttcaaccggcagcaacccacctgcgcttcacctgagtttgtacagggaaaagagttg
aaagatttcccggatgtcctgcagcccaactacttcacgtgtcgcaagtccaggattcgg
gatcgcaaggcacagcagaaatttgtggacgagggaactactgttcattttgtatgccag
gcggacggtgatcccgccccagtcatcatgtggctctcaccacagaagcagttcatcacg
accaaaaccatcgggcggctcacagtattccccgatggcacccttgaggtgcgctatgcg
cagattcaggataatggcacatatgtgtgtatagccagcaacgccggtggcaacgacaca
tctctcgcccacctgcatgtccacagctactctccagactggcctcaccaacccaacaag
acctttgccttcatctccaaccagcccaacgagaatggtgccaatgggacgcgaaccaac
gtccccttcccctttgacataaagaccttaatcatcgccaccaccatgggcttcatatct
ttccttggtgtcgtcctgttttgtctggtgctactctttctgtggagtagaggtaaaggg
gccacaaagcacaacatagagattgagtatgtgccacgcaagtcagacgctggcatgagc
agcagcaacgcagacgcccctcgcaagtttaacatgaaaatgatttaa
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